KEGG   Serratia sp. AS13: SerAS13_4003
Entry
SerAS13_4003      CDS       T02012                                 
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
sra  Serratia sp. AS13
Pathway
sra03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SerAS13_4003
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sra03400]
    SerAS13_4003
Enzymes [BR:sra01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     SerAS13_4003
DNA repair and recombination proteins [BR:sra03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     SerAS13_4003
SSDB
Motif
Pfam: RecD_N AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 Helicase_RecD AAA_11 SH3_13 AAA_22 UvrD-helicase SLFN-g3_helicase PhoH nSTAND3 AAA_16 CbiA UvrD_C T2SSE AAA_28 SRP54 TrwB_AAD_bind MukB ATPase AAA Flavi_DEAD NTPase_1
Other DBs
NCBI-ProteinID: AEG29761
UniProt: A0A7U3Z544
Position
complement(4274893..4276743)
AA seq 616 aa
MIALLEQAQALGVLRPLDLQFARIVAGEEEPDILLAAACLSAEAGAGHVCLMLEQLLPEN
LFEGRQPELAQAVWLAAGQPDLARWQQRLMASAAVGDGSSAMPMVLQQQRLYLQRMWQNE
GEVAEFISSDSIHQAVDEPELHAILDRLFGEATNEPDWQKIAAAVAATRRIAVISGGPGT
GKTTTVAKLLAALVQLADGRRLRIQLAAPTGKAAARLTESLGSAGRQLALTPEQRALFPT
DASTLHRLLGAQPNSQRMRYHRGNPLHLDVLVVDEASMVDLPMMARLIAALPTQARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSAARAEQLTRLTGCLLQGQSAQAEAAVRDSLCLL
RKSYRFDADSGIGQLAFAVNAGDGKRAAWALSGSFSDVAGYPLAETEDYQALLNACVAGY
GDYLQRVAARADAGEVLAEFGRFQVLCALREGPFGIAGLNERIEAGLQRAGLIQRTPGAL
GRWYPGRPVMIGRNDSALGLFNGDIGIALRDESGELRVHFQLPDGNIKSVQPSRLPAHET
AYAMTVHKSQGSEFDHTVLVLPNHFLPVLTRELVYTAITRARSQLSLYATETVLMRAIRT
PTQRRSGLAERLQITP
NT seq 1851 nt   +upstreamnt  +downstreamnt
atgatcgcgctactggaacaggcacaggcacttggcgtgctgcgcccgttggacctgcag
tttgcccgtatagtggccggtgaggaagagcctgacattctgctggctgccgcctgcctc
agtgcggaggcaggcgccggtcatgtttgcctgatgctggaacagttactgccggaaaat
ctgtttgaagggcgtcagccggaactggcgcaagccgtgtggctggcggccgggcaaccg
gatcttgcccgctggcagcagcgcctgatggccagtgcggcggtgggtgacggcagcagt
gccatgccgatggtgttgcaacagcagcgtttgtacctgcagcgcatgtggcagaacgaa
ggcgaggtggcggagtttatcagcagcgacagtatccatcaggcggttgatgaacccgaa
ctgcatgccatcctcgatcggctgttcggcgaggcgacgaatgagccggactggcagaaa
attgctgccgcagtggccgcgacgcggcgtattgctgtgatttcaggtgggccgggcacc
ggcaaaaccaccaccgtcgccaaattgctggcggcgctggtacagcttgccgatggcagg
cgcttgcgtattcaactggcggcacccaccggcaaggcggcggcgcgtctgaccgaatcg
ctcggcagcgccggcaggcagttggcgttaaccccggagcaacgcgcgctgttccccacc
gatgcgtcgacgctgcaccgcctgttaggcgctcagcccaatagccagcgcatgcgttat
caccgtggcaacccgctgcatctggatgtgctggtggtggacgaggcttcaatggtcgat
ctgccgatgatggcgcgtctgattgccgcattgcccactcaggcgcgggtgattttcctt
ggcgacagggatcaactggcgtcggtagaggccggtgctgtactgggggatatctgccgt
tttgccgagcagggatacagtgctgctcgtgcggaacaactcacccggctgacaggctgc
ctgttgcaggggcaaagtgcgcaggcggaagcggcggtgcgagacagcctgtgcctgctg
cgcaaaagctatcgttttgatgccgattcgggcattggtcaattggcttttgcggtgaat
gccggtgacggtaagcgtgcggcttgggcactcagcggcagtttcagtgacgttgcgggt
tacccattggcagaaacggaggactatcaggccctgctgaacgcctgtgtagcaggctac
ggtgattatttgcagcgggtcgctgccagggcggatgcgggagaggtgctggcggagttt
ggccgtttccaggtgctgtgcgcgctgcgcgaagggccattcggtatcgccgggctgaac
gagcgtatcgaggcgggattgcaacgggccgggctgatccagcgtacgccaggggccttg
gggcgttggtatcccggtcgtccggtgatgattggccgcaacgacagtgcgttggggctg
tttaacggcgatatcggtatcgctctgcgtgatgagagcggcgagctgcgcgtgcacttc
caactgccggacggcaacatcaagtcggtgcaaccgagccgtttaccggcgcatgaaacc
gcctatgcaatgacggtgcacaagtctcagggatcggagtttgatcatacggtgctggtg
ttgcccaatcacttcttgccggtactgacccgcgaactggtgtataccgccatcacccgc
gcgcgtagccagctttcgctgtatgccaccgagaccgtgctgatgcgggcgatccgcacg
ccaacccaacgccgcagcgggttggcggagcgcttgcagataacgccataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (35)   

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