KEGG   Streptomyces rapamycinicus: M271_15885Help
Entry
M271_15885        CDS       T02907                                 

Definition
(GenBank) 5-hydroxymethyluracil DNA glycosylase
  KO
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
src  Streptomyces rapamycinicus
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:src00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    M271_15885
Enzymes [BR:src01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     M271_15885
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     M271_15885
DNA repair and recombination proteins [BR:src03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     M271_15885
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
Position
complement(4101729..4102667)
Genome map
AA seq 312 aa AA seqDB search
MPELPEVEVVRRGLERWVSGRTVAEVQVLHPRAVRRHLGGAEDFAARLRGRRAGTVRRRG
KYLWLPFDDDAAAESVLAHLGMSGQLLVQPAEAPDEKHLRIRVRFADDAGTELRFVDQRT
FGGLSLHDTVPGDLEGLPDVIAHIARDPLDPAFDEAAFHLALRRRRTTIKRALLDQSLIS
GVGNIYADEALWRARLHYDRPTATLARPRAAELLDHVREVMTAALAVGGTSFDSLYVNVN
GESGYFERSLDAYGREDEPCRRCGTAMRRRPWMNRSSYFCPRCQRPPRPATSGARPASRA
AAASPLPARVVS
NT seq 939 nt NT seq  +upstreamnt  +downstreamnt
ttgcccgagctgcccgaggtcgaggtggtccgccgcggactggagcgctgggtcagcggc
cgtacggtcgccgaggtccaggtgctgcacccccgcgcggtccgccgccatctcggcggc
gcggaggacttcgcggcccgcctccggggccgccgcgccgggaccgtccggcgccgcggc
aagtacctgtggctgccgttcgacgacgacgcggccgccgagtccgtcctggcccacctc
gggatgagcggacagctgctggtccagccggccgaggcgcccgacgagaagcatctgcgg
atccgggtccgcttcgccgacgacgcgggcaccgagctgcgcttcgtcgaccagcgcacc
ttcggcgggctctcgctgcacgacaccgtccccggcgacctggaggggctgccggacgtc
atcgcgcacatcgcccgcgacccgctggaccccgccttcgacgaggccgcgttccacctc
gcgctgcgccgccgccgcaccacgatcaagcgcgcgctgctggaccagtcgctgatcagc
ggggtcggcaacatctacgccgacgaggcgctgtggcgggcccggctgcactacgaccgg
cccacggccaccctcgcccggccgcgcgccgccgaactcctggaccatgtgcgcgaggtg
atgaccgccgcgctcgccgtcggcggcaccagcttcgacagcctctatgtgaacgtgaac
ggcgagtcggggtacttcgagcgctccctggacgcctacggccgggaggacgagccctgc
cgccgctgcggcaccgcgatgcgccgccgcccgtggatgaaccgctccagctacttctgc
ccgcgctgtcagcgcccgccgcgcccggccacctcgggggcccgtccggcgtcccgcgcg
gccgccgcctcgccgctcccggcgcgcgtggtgtcgtag

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