KEGG   Spirosoma radiotolerans: SD10_08880
Entry
SD10_08880        CDS       T03819                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
srd  Spirosoma radiotolerans
Pathway
srd03030  DNA replication
srd03410  Base excision repair
srd03420  Nucleotide excision repair
srd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:srd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SD10_08880
   03410 Base excision repair
    SD10_08880
   03420 Nucleotide excision repair
    SD10_08880
   03430 Mismatch repair
    SD10_08880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:srd03032]
    SD10_08880
   03400 DNA repair and recombination proteins [BR:srd03400]
    SD10_08880
Enzymes [BR:srd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SD10_08880
DNA replication proteins [BR:srd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SD10_08880
DNA repair and recombination proteins [BR:srd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SD10_08880
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SD10_08880
   MMR (mismatch excision repair)
    DNA ligase
     SD10_08880
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SD10_08880
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 BRCT_2 Auto_anti-p27 PTCB-BRCT zf-NADH-PPase HHH HVO_2753_ZBP DZR_2 zf-ACC
Other DBs
NCBI-ProteinID: AKD55000
UniProt: A0A0E3ZV98
Position
2227131..2229176
AA seq 681 aa
MNPQERIAELTNRLNYYNHQYYQNSVSEVDDFTFDKLLAELTSLETQHPEFRQPDSPTAR
VGGTISKEFKTVYHRFPMLSLGNTYSEEDLVEFDKRVQKGLNGQSYEYICELKFDGVALS
MTYENGVLVQGATRGDGVRGDDITNNIRTIRTVPLRIHKTDVPALFEVRGEGFMPLAEFE
RINKEREDIGEALLANPRNAASGTFKQQDSAAVAKRRLDCYLYSFLSDVEVFHTHEESLI
ALKEWGFNVSQTWRKCTDIREVMLYINEWDTKRFELPLNTDGIVIKVNRYDQQRDLGYTA
KSPRWAIAFKYKALAASTTLNGIQYQVGRTGAVTPVALLTPVLLAGTIVKRASLHNSNEI
ERLGIQLHDTVFVEKGGEIIPKITGVDLNRRTEKSEPIIYPTTCPACGTPLIRKEGEAHF
YCPNERGCPPQRQARFEHFIQRRAMNIESLGEGKIELLIDRGLVQTPADLYKLTTNDLLG
IEKVFLDEETGKKRIVSFREKTVENILTAIDRSKAQPLPNVLFALGIRYVGNTTAEKLTD
YFGSMDAIMNASPEALLAVPDTGPRIAESVVAWFADPENREYVEALRAAGLQFAGEKKVV
EQEGDSLTGKTFLYTGTFENFSREELESRIEANGGRLLSGISKKLNYLIVGENAGPSKVE
KARKLNVAMIGEDEFMAMLNV
NT seq 2046 nt   +upstreamnt  +downstreamnt
atgaatccccaggaacgcattgccgaactgacaaatcgcctaaactattacaaccatcaa
tactaccagaatagtgtttcggaagtagatgatttcacattcgataaactattagccgaa
ctaacgtcgctcgagacgcagcatcccgagtttcgtcagcctgattcgccaacagcccgt
gtgggcggcaccatcagtaaggagttcaagactgtgtaccaccggtttccgatgctttcg
ctgggcaacacctactccgaagaagaccttgttgagttcgataaacgggttcagaaagga
ttgaacggtcaatcgtacgagtatatctgtgaattgaaattcgatggggttgcgctgagc
atgacctacgagaatggtgtattggtgcagggcgccacgcggggcgatggcgttcggggc
gatgatattaccaacaacattcggactattcgcacggtgccgttgcgcattcataaaacc
gatgtgcctgccttgtttgaggttcggggcgaagggttcatgccattggccgagtttgaa
cggattaacaaggagcgggaagatattggcgaggccttactggctaatccgcgtaatgcc
gcatccggaacgtttaaacagcaggattcggccgcagtggccaaacgacgtctggactgc
tatttatactcatttctgtcagacgttgaggtctttcacacacacgaagaaagcctgatt
gcgctgaaggaatggggtttcaacgtctcgcaaacctggcgaaaatgcaccgatattcgg
gaggtgatgctatatataaatgagtgggatacgaagcgattcgagcttccgctcaatacg
gacggcatcgttataaaagtaaatcgctacgatcagcagcgggatctgggctacacggcc
aaaagtccgcgctgggccattgcttttaaatacaaagcactggccgccagcacgacgttg
aatggaatccagtaccaggttggccggacaggtgccgtgacgcccgttgccttactaacg
cccgtattattggccggaaccattgtcaaacgggcttcacttcataattcaaatgagatc
gaacggctgggcattcagcttcacgataccgtttttgtggaaaaaggcggtgaaatcatt
ccgaaaataacgggtgtcgatctgaaccgccggaccgaaaaaagtgagcccattatttac
ccaacaacctgccccgcttgtggaacgcccctgattcgaaaagaaggcgaagctcatttt
tattgtcccaatgagcgcggctgtccgccccagcggcaggcccggttcgagcacttcatc
cagcgtagagccatgaatatcgagagcctgggtgaaggaaaaattgaactactcatcgac
cggggactggtgcaaacaccagccgacctgtataaactgacgacaaacgacttactggga
atcgagaaggttttccttgatgaagaaacgggcaaaaagcgaatcgtcagtttccgggaa
aagacggtcgaaaatatcctgacggctatcgaccgctcgaaagcgcagccgctgcccaac
gtgctgtttgcgctgggcatccggtatgtgggtaacaccaccgccgagaaactgacagat
tattttgggtcgatggatgccatcatgaacgccagtccggaagccctgctggccgtaccc
gacacagggccacgcattgccgagagcgttgtcgcctggtttgccgaccccgaaaatcgg
gaatatgtagaagcgctccgggcagccggtctacaatttgctggtgagaaaaaagtggtg
gagcaggagggcgattcactaacagggaaaacctttctgtatacgggtaccttcgagaat
tttagccgcgaggaactcgaatcccgcatcgaagctaacggcggcagattgctcagcgga
atttccaagaagctgaactacctgattgtcggtgaaaatgcgggcccatctaaagttgag
aaagcccgcaaattaaacgtagccatgatcggtgaagatgagtttatggccatgctgaac
gtgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (34)   

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