KEGG   Spirosoma radiotolerans: SD10_27080
Entry
SD10_27080        CDS       T03819                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
srd  Spirosoma radiotolerans
Pathway
srd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:srd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SD10_27080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:srd03400]
    SD10_27080
Enzymes [BR:srd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SD10_27080
DNA repair and recombination proteins [BR:srd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      SD10_27080
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII RecG_dom3_C DUF928
Other DBs
NCBI-ProteinID: AKD58023
UniProt: A0A0E3ZZK1
Position
complement(6633443..6636796)
AA seq 1117 aa
MKPEELIGLYTDDNFIKLLTEPFSRKPTNEPQRLQIKGLAGSLDAVLASAIFKSVGGNHL
YILSDRDEAAYFFNDLQNLLGREVLLFPMSYKKPYQYEEVENANVLMRAEVLNKLNPAPK
DGLLMVTYPEALSEKVINKRSLQANTLTIRVGEKLDTHFVSELLQTYEFEKTDFVYEAGQ
FSVRGGIIDVFSFASEFPFRIDLFDDEVESIRKFNPESQLSTDPVEFINIIPNIQTKLTQ
ESREPFFDFLPDATTIWAKDVEFTLEIIEKCYEKAEQSFTTVVASSGGIQVVSDPNALWE
TRRSFLNELKRFRTVEFGRKFYFKTDGRQQYSSKPQPSFNKDFKRLIDTLGDNQAKGYTN
IIAGESFKQLDRLRTIFEELDPFVTFQPMNIGLREGFMDDALKIACFTDHQIFDRYYKYR
VQDKFSKSKALTLRELKTLQPGDYVTHVDYGIGRFAGLEKVDHAGNEQEAIRLIYRDNDI
LLVSIHSLHKIAKYSGREGGPPTMSKLGSQEWEQKKSRIRKQVKDIARELIALYAKRRTA
PGYAYSRDSFLQAELESSFIYEDTPDQAKATNDVKDDMERPHPMDRLVCGDVGFGKTEIA
IRAAFKAVTDNKQVAVLVPTTILAMQHYKTFTDRMADFPVKIEYINRFRTATQVKEILKG
VASGEIGILIGTHRIVNKDIKFKDLGLLVIDEEQKFGVKTKDRLKEMRVEVDVLTLTATP
IPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHPFNEATIRDAVSYEIRRGGQVFFVHNR
VNDIESIGNLIMRLVPEARIGVAHGQMEGERLERIMTRFIEGDYDVLISTNIIESGLDIP
NANTILINNAHYFGLSDLHQMRGRVGRSNRKAFCYLLTPPPSVLTADARKRLQTLEDFSD
LGEGFKIAMRDLDIRGAGNLLGAEQSGFVNDLGFEMYHKVLDEAVQELRENEFKDLFETK
PGDLKLALPDTVIETDLQVVIPERYVSNISERLALYTRLDSLQNVEEVQAFRQEVIDRFG
PMPEEVENLIKMVNVRWKAEKLYLEKLTLKNNIMKGYFVSNGNDDFFKSDQFGKVIEYLK
RNPAKSSVKESKGRPIITHADVFSVEQLDEILGALTN
NT seq 3354 nt   +upstreamnt  +downstreamnt
ttgaaacctgaagaattaatcggtttgtataccgatgataatttcataaaactgctgaca
gaaccgttttcgcgaaagcctaccaacgaacctcagcgtttacaaattaaaggcttggcg
ggcagtttagatgccgtgctggcatcagcaatcttcaagtcggtgggaggcaatcatctc
tatattctctcagaccgggatgaagctgcttactttttcaacgacttgcaaaatctgctc
ggccgtgaagtgctgctgtttccgatgtcgtacaagaaaccatatcagtacgaagaagtt
gaaaacgcgaatgtactcatgcgcgccgaggtactgaataagctcaatccggctccgaaa
gatggcttgctcatggtaacctatccggaagctctctcggaaaaagtgatcaacaaacga
tcgttacaagccaacacattgacaattcgggtaggggagaaactagatactcatttcgta
tcagaactactgcaaacctatgagtttgagaagaccgactttgtgtatgaagcgggtcag
ttttcggtgcgcgggggaatcatagacgttttttcattcgcaagtgaatttccatttcga
attgatctattcgacgatgaggttgaaagcattcgcaaattcaatcccgaatcacagctt
tctacagaccctgttgagttcatcaacatcatcccaaacatccagactaagcttactcag
gaaagcagagaaccgttcttcgatttcctaccggatgctacaaccatatgggcgaaggat
gtggagtttaccctggaaattattgagaaatgctacgagaaggccgaacaaagctttaca
accgtagtcgcgtcgagcgggggtattcaggttgtttcagacccaaacgctttgtgggaa
acccgacggtcattcctgaatgaattgaaacggttccgtaccgttgagttcgggcgcaag
ttttacttcaaaaccgacggaaggcaacaatacagctcgaagccacagccctcttttaat
aaagatttcaagcgcttaattgacacactgggtgacaatcaggcgaagggatacactaac
attattgcgggtgaatcctttaaacaactggaccgtttacgaacaattttcgaagaacta
gatccgttcgttacgtttcagccgatgaacattgggctccgcgagggattcatggacgac
gccctaaagattgcctgttttaccgaccaccaaattttcgatcggtattacaagtatcgg
gttcaggataagttttcgaaatcgaaagccttgacgttgcgcgaactgaaaaccctccag
ccgggcgattatgtgacgcacgttgattacggcattggccgatttgcggggcttgagaaa
gtggatcacgcaggtaacgagcaggaagccatccggctcatttaccgcgataatgatatc
ctgctggttagcatccatagtttgcacaagattgccaaatacagtggacgggagggtggg
ccgcctaccatgagcaagttgggctcgcaggaatgggagcaaaaaaaatcacgtatccgc
aagcaggtcaaagacattgcccgcgaattaattgcgctctatgccaaacggcgaacggca
cccggatacgcttatagccgagatagctttctgcaagccgagttggaatcgtcttttata
tatgaagacacccccgatcaggccaaggcaacaaatgacgtaaaagatgacatggaacga
ccacaccccatggaccggctggtatgtggcgatgttggttttggcaaaacagaaatagct
atccgagccgctttcaaagccgtaacagacaacaaacaggtggccgtactcgtcccaaca
acgattctggccatgcaacattacaagacctttaccgaccggatggccgatttcccggtt
aagattgagtacatcaatcggtttcggacagccactcaggtaaaggaaattctaaaaggt
gtcgcttcgggcgagattggaatattaataggcacgcaccggattgtcaacaaggacatc
aagttcaaggatttaggcctgctggtcattgatgaggaacagaaattcggggtaaaaaca
aaggatcgcttaaaagaaatgcgggttgaagttgatgtacttaccctaacggcaacaccc
attcccagaaccctgcatttctcgctcatgggtgcccgtgacttatcggtcattgctact
ccgccacccaatcgtcaacctgttacgaccgaggttcacccatttaatgaagctacaatt
cgggatgctgttagttatgagatccggcggggtggacaagtcttctttgttcataaccgg
gtcaatgatattgagtccatcggtaacctaattatgcggctcgtacccgaggctcgcatc
ggcgtagcacacggccaaatggaaggcgaacgactggagcggattatgacccgcttcatt
gagggtgattatgatgtattgatctcaaccaacattattgaatcgggactggacattccc
aatgccaacacgatattgataaacaacgcccattatttcggactgtcagacttacaccaa
atgcgcggtagggtagggcgatcgaaccggaaagcattctgttatcttctgacgcccccg
ccgtcggtgctcacagccgatgcgcgcaaacggctccaaaccctcgaagacttttctgat
ctgggtgaaggctttaaaattgccatgcgtgatctggatattcggggcgcgggtaatctg
ctgggtgctgaacagagcgggtttgtcaatgatcttggttttgaaatgtaccataaagta
cttgatgaggctgttcaggaattacgcgagaatgaatttaaagacctcttcgaaacgaaa
cctggtgatttaaaactagcccttccggataccgttattgaaactgatttacaggtcgtt
attcctgaacgatacgtatcgaatatttcagaacgactggcgttatatactcgcctggac
agccttcaaaacgtggaagaagtgcaggcctttcgtcaggaagtgatcgaccggtttggg
cctatgcctgaagaagtcgaaaacctaatcaaaatggtgaacgttcgctggaaagccgag
aagttataccttgaaaaactgacgcttaagaataatatcatgaaaggatacttcgtttct
aacgggaacgatgacttctttaaatctgaccaatttggcaaggtaattgagtatttaaag
cgaaacccagccaaaagttcagtaaaagaatcaaaagggcgacccatcattacacatgcc
gacgttttttctgtcgagcaattggatgaaatactgggtgccttgacaaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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