KEGG   Salpingoeca rosetta: PTSG_00197
Entry
PTSG_00197        CDS       T04136                                 
Name
(RefSeq) splicing factor 3a
  KO
K12827  splicing factor 3A subunit 3
Organism
sre  Salpingoeca rosetta
Pathway
sre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTSG_00197
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sre03041]
    PTSG_00197
Spliceosome [BR:sre03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    PTSG_00197
 Complex B
    PTSG_00197
 Complex C
   U2 SnRNP specific factors
    PTSG_00197
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd RNA_pol_3_Rpc31
Other DBs
NCBI-GeneID: 16067577
NCBI-ProteinID: XP_004998746
UniProt: F2TVS8
Position
Unknown
AA seq 543 aa
MDFLVEKQRQLHEEVDRLVKDGATVMQHKFDTQKSKVNALHLQRLLVDRMSNNARELVEL
YNDADGERKKEIDALSVNPFESFYEKLGEIKEYHKEAPNAIARPVRTDILPDFLQPEALL
EAQQQKNASRKRKTGNDKPAETKTPGLAGFVEFSGEESHGRFLDLHEHFVAYNNLKGVPH
MEYLEYVQTFDLLSELPRQIKKTAAYKSYINNLAAYLVEFYRRTNPLADIDAELAQAQKD
FEALWASGKFRGWQDVKPITNVERLDLSAFSSASELEALGMDRLKSALMAEGLKCGGTLQ
QRAQRLFSTKGVPREKWSKAILAKGAKRNANGASANANGSTGNNAGGVVSVVDEKKEVAS
VEARILVMAKLLSQVRRATKENVERKMARSAGEVGDEEDLPEIDDEFESDEEEDEDMKVG
KRNALVLGPDGKPIPYWLYRLHGLNIIYTCEICGNYPYRGPKNFQQHFTEWRHAQGMRAL
GIPNTKHFANVTNINDAKALWARLQDQKAQERFEPDQEEEYEDSMGNVVNKKTYNDLLKQ
GLL
NT seq 1632 nt   +upstreamnt  +downstreamnt
atggacttcttggtggagaagcagcgccagctgcatgaggaagtggatcggctggtcaag
gatggggccacggtcatgcagcacaagtttgacacgcaaaagtcaaaagtgaacgccctt
cacttgcagcgtctcctggttgaccgcatgtccaacaacgcacgcgagcttgtggagctg
tacaacgatgctgacggggagcggaagaaggagattgatgcactgagcgtcaaccccttt
gagtcgttctacgagaagctcggggagatcaaggagtatcacaaagaagcgccaaacgcg
attgcccggccagtgcgcacggacatcttgccagactttcttcagccagaagcgctgttg
gaggcacagcagcagaagaatgcgagcaggaaacgcaaaaccggcaacgacaagccagca
gagaccaagactccgggcctcgctggatttgttgagtttagcggcgaggagagccacgga
cggtttctggacttgcacgagcatttcgtggcgtacaacaacctcaagggcgtgccccat
atggagtacctcgaatacgtgcagacctttgatctcctctctgagcttccgcgccaaatc
aagaagaccgccgcttacaaatcgtacatcaacaaccttgccgcgtacctcgtggagttt
taccgccgcaccaacccactcgcagacatcgacgcggagctggcgcaagcgcaaaaggac
tttgaggcgctgtgggcgagcggcaagttccgcgggtggcaggacgtgaagcccatcacc
aacgtggagcggctggacctgtcggcgttttcgtccgccagcgagctcgaggcgcttggc
atggacaggctgaagagtgcgctgatggcggaggggctcaagtgcggcgggacgctgcag
cagcgagcacaacggctgttctccaccaagggcgtgccgagggagaagtggagcaaggcc
atcctcgccaagggtgccaaacgcaacgcaaacggcgccagcgccaatgcaaacggcagc
acaggcaacaacgcgggcggtgtcgtgtcggttgttgacgagaagaaggaggttgcttcg
gttgaggcgcgcatcctggtcatggccaagctgctgtcgcaagtccgccgggcgaccaag
gagaatgtcgagcgcaaaatggcgcggagtgcgggcgaggttggcgacgaggaggatctg
ccggagattgacgatgagtttgagtctgacgaggaagaggacgaggacatgaaggttggg
aagcgcaacgcccttgtgctcggcccagacggaaagcccatcccctactggctgtatcgc
ctgcacggtctcaacatcatctacacctgcgagatctgcggcaactacccgtaccgcggc
ccaaagaactttcagcagcactttacggagtggcggcacgcgcagggcatgcgcgccctc
ggcatcccaaacacgaagcactttgccaacgtcaccaacatcaacgacgcaaaggcattg
tgggcccgtcttcaggaccagaaggcgcaggagcggtttgagccggatcaggaggaagag
tacgaggactcgatgggcaacgtggtcaacaagaagacgtacaacgatctcctcaagcaa
ggcttgctgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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