KEGG   Salpingoeca rosetta: PTSG_00897
Entry
PTSG_00897        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K12589  exosome complex component RRP42
Organism
sre  Salpingoeca rosetta
Pathway
sre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTSG_00897
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_00897
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PTSG_00897
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     PTSG_00897
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 16078960
NCBI-ProteinID: XP_004998365
UniProt: F2TXT1
Position
Unknown
AA seq 304 aa
MNFRQTLAKRYKQISNKGKMASKAERQFIANGIAANIRCDGRDLLDRRPLELETGNITNA
NGSSRVQLMGTDVLVGVKVEVATPTDDRPDEGMLEFSISSSSANATVAALDARTADKMTR
SLEFLAEQLQKTSHALDLKKLCILPGKAVWCVRVDVLVLQSLGGNVVECVFLAIKAALHD
TTIPNCTLIKDSNGEAVDFDISSNAYDVSPIEGVAEFPVILCFGIIGARVFADPLFEEEE
CADAFVLVGVSASGAVCLTQQVCAGRGVDPTTIIEAVDTARQAVKGVLEDTGCTHTSICN
ADGQ
NT seq 915 nt   +upstreamnt  +downstreamnt
atgaattttcggcaaaccttggcaaagcgatacaagcagatcagcaacaagggcaagatg
gcaagcaaagcagaacggcagttcattgccaatggcatcgcagccaacatccgctgtgat
ggccgtgatctcctggatcgaaggccactcgagttggagactggaaacatcacaaatgca
aacggatcgtcacgagtacagctgatgggcacggatgtgctggttggcgtgaaagtggaa
gtggcaactccaacagacgaccgccccgacgagggcatgctcgagttctccatcagttct
tcaagtgcaaacgcgacagtcgccgcattggatgcaagaacagcagataagatgacgcgc
tccctggagtttctggctgagcagctgcagaagacatcacacgccctcgacttgaagaag
ttgtgtatcctgccgggcaaggccgtgtggtgcgtgcgcgtggacgtgctggtgctgcag
agcctgggcggaaacgtggtggagtgtgtgttcctcgccatcaaggctgcgctgcacgac
acgaccatccccaactgcaccctcatcaaggacagcaacggtgaagccgtggactttgac
atctccagcaacgcttacgacgtgtctccgattgagggtgttgctgagtttcctgtcatc
ctctgcttcggcatcatcggcgcccgcgtttttgctgatccgctctttgaggaggaggag
tgcgcagacgcgtttgtgctggtaggcgtgagtgcgagcggggcggtgtgtctgacgcag
caggtgtgtgctgggcgtggcgttgatcccacgaccatcatcgaggcagtggacactgcg
cgacaggctgtcaagggcgtgttggaggacacgggctgtacacacaccagcatctgcaat
gccgatgggcagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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