KEGG   Salpingoeca rosetta: PTSG_02517
Entry
PTSG_02517        CDS       T04136                                 
Name
(RefSeq) DEAD/DEAH box helicase
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
sre  Salpingoeca rosetta
Pathway
sre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTSG_02517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_02517
   03041 Spliceosome [BR:sre03041]
    PTSG_02517
   03009 Ribosome biogenesis [BR:sre03009]
    PTSG_02517
   03016 Transfer RNA biogenesis [BR:sre03016]
    PTSG_02517
Enzymes [BR:sre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     PTSG_02517
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     PTSG_02517
Spliceosome [BR:sre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    PTSG_02517
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    PTSG_02517
Ribosome biogenesis [BR:sre03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    PTSG_02517
Transfer RNA biogenesis [BR:sre03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    PTSG_02517
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 Methyltrans_RNA WipA_N
Other DBs
NCBI-GeneID: 16077601
NCBI-ProteinID: XP_004997009
UniProt: F2U2F3
Position
Unknown
AA seq 1034 aa
MDGLFDAFDETAPRAATPAKHKSNVQAVIEAVAEAGDKRLPPTTTPDDIEDNTPGGVKAE
LARIEAKKKNVSAHDSVSIPLSKMGAAFQKVSATPTVISGGSKDCLHEVAIPPGHEYTPF
DETPAPEKPAKTYPFTLDPFQRVSVQCLERNESVLVSAHTSAGKTVVAEYAIAMSLRDGQ
RVIYTSPIKALSNQKYRELAEEFKDVGLMTGDTTINPSASCLVMTTEILRSMLYRGSEIM
REVGWVVFDEIHYMRDANRGVVWEETLILLPDNVHYVFLSATIPNALQFAQWISHIHNQP
CHVVYTDYRPTPLQHYIYPSGAEGLYLIVGPDGGFRDDNFTKAMASMQISGAANKGRAKG
RSKGQSNISAIVGMIMKRKLHPCIVFSFSKRECETYAMDLSKLDFNTEDEKKNIELIFTN
AIASLSEEDRALPSIENLLPLMKRGVGVHHSGLLPIMKEVTELLFGEGLVKVLFATETFA
MGLNMPAKTVVFSNVKKFDGKEFRPLSSGEYIQMSGRAGRRGLDTNGIVILMMQEKLEPQ
NAKGMLQGQADKLNSAFRLTYNMVLNLLRVEEINPEYMLNKSFYKFQNTQDIPAMRKRVE
ELAAEHKRFTVDREDEVEMYHTLVTSKDTLEGKLSTAITETKHILRYLNPGRLVHVQDSQ
QDWGWGAVVNFQRKKPQQLPGQAQQTKEVVIVDVLLNCDATVVKGDKPRPCPANGSGDPQ
VIPVVLGAIKGLSRLCMRLPRSIKPADERKRLYKNIRETLRRKGPCPLHPVKEMKIQDEA
IVHLCSQIDDLHQRIETHPLHKDENRESLLALFRKKRDIYEELLATKRQLKMSESIQQLD
ELKSRKRVLRRLKFCTDDDVIEMKGRVACEINTGDELLITEMIFNGVFNDLSVVQVVSLM
SCFVASPTKDETPSKMKEELSGPFKQMQEMARRIAKVSIESRITLDEEEYVSQFAPDMMD
IVNQWCCGARFSDICKITTMYEGSIIRSMRRLEELLRQMAAAAKAIGNSELEHKFAEGMS
LIKRDIVFANSLYL
NT seq 3105 nt   +upstreamnt  +downstreamnt
atggacgggctgtttgatgcgtttgacgagacagcaccacgtgctgcgacaccagcaaag
cacaagagcaatgtgcaagctgtgatcgaggctgttgccgaggccggcgacaaacgtctg
cctccaaccaccacaccagatgacattgaggataacacgccaggcggtgtcaaggctgag
cttgctaggatcgaagcaaagaagaagaacgtatctgcgcatgacagcgtgtccatcccc
ctcagcaagatgggggctgcgttccagaaagtctctgcaacgccaacagtgatcagcggc
gggtccaaggactgcctgcacgaggtggccattccaccagggcacgagtacacgccattt
gatgagacgccggcccctgagaagccagccaagacatacccgttcacactcgatcctttc
cagcgagtcagcgtgcagtgtctcgagcgcaacgagtctgtgctcgtatctgcgcacaca
tctgcgggtaagacggtggttgccgagtacgccatcgccatgtctcttcgtgacggccag
cgtgtgatctacaccagcccgatcaaggcgctgagtaaccagaagtaccgcgagcttgca
gaggagttcaaggatgtcggcctcatgactggtgatacgaccatcaacccaagcgccagc
tgtctggtgatgacaacagagattcttcgctccatgctctatcgcggctcggagatcatg
cgtgaggttggctgggttgtctttgacgaaatccattacatgcgcgacgcaaaccgcggt
gttgtgtgggaggagacgttgattctgctcccagacaacgtccactatgtcttcctctcc
gccaccatcccaaatgccctgcagtttgcccagtggatcagccacattcacaaccagcca
tgccacgtcgtgtacacggactaccgccccacgccgctgcagcactacatctacccgtcc
ggcgcagagggactctacctcattgtgggcccagacggcgggttccgggacgacaacttt
accaaggcgatggcgtcgatgcagatctctggggccgccaacaaaggccgggccaagggc
cgctccaaggggcagtccaacatcagcgccattgtgggcatgatcatgaagcgcaagctc
cacccctgcatcgtcttcagcttcagcaagcgcgagtgcgagacatacgccatggacctc
tcgaaactcgactttaacacagaggacgagaagaagaacattgagctcatcttcaccaac
gccatcgcctccctctccgaggaggatcgcgccctcccctccattgagaatctcctgccg
ctgatgaagcgtggtgtgggcgtgcaccacagcggtctgctgcccatcatgaaggaggtc
accgagctcctctttggcgaaggcctcgtcaaggtgctgtttgccacggagaccttcgcc
atgggtctcaacatgccggccaagaccgttgtgttttcaaacgtgaagaagtttgatgga
aaggagttccgcccgctgtcctctggcgaatacatccaaatgtctggacgtgccggccgt
cgcggcctggacacaaacggcattgtcatcctcatgatgcaagaaaagctggagccccag
aacgcaaaggggatgctgcaaggacaggcagacaagctcaactccgccttccgcctcaca
tacaacatggtcttgaatctgctgcgtgtggaggaaatcaacccagagtacatgctcaac
aagagcttctacaagttccagaacacacaagacattcctgcgatgcgcaagcgcgtggag
gagttggcggcggaacacaagagattcaccgtcgaccgtgaggatgaagtcgagatgtat
cacacgctggtcacgagcaaagacacgcttgagggaaagctcagcacagcaatcacagag
acaaagcacattctcagatacctgaacccgggcagattggtgcatgtgcaggattcacag
caggactggggatggggtgccgttgtcaatttccagcgcaagaagccccagcagctgccg
ggccaggcacagcagacgaaagaagtggtgattgtggatgtgctgctcaactgcgatgcc
accgtcgtgaagggtgataagccacgtccgtgcccggcaaatggatccggggatccgcaa
gtcatcccggtcgttctcggtgcaatcaagggcctctccagattgtgcatgcggcttcca
aggagcatcaagccggctgacgagcggaagcgcttgtacaagaacatccgggaaaccctt
cgtcgcaaaggaccgtgcccgctgcaccccgtgaaagagatgaagattcaggacgaagcg
attgtgcatctgtgctcccagattgatgatctccaccaaaggattgagacgcatcctctg
cacaaggacgagaaccgggaatctctcctcgcactcttccgcaaaaagcgtgacatctat
gaggagcttctggcaacaaagcggcagctgaagatgagcgaatccatccagcaactcgat
gaactcaagagccgcaaacgcgttcttcgcaggttgaagttctgcacggacgacgatgtg
attgagatgaaggggcgggttgcatgcgaaattaacacgggcgacgagctgctcatcaca
gagatgatcttcaacggcgtcttcaacgacctctcagtggtgcaagttgtgtcgctgatg
tcgtgctttgttgcgagtccgacaaaggacgagacgccgtccaagatgaaggaggagctg
agcggccccttcaagcagatgcaggagatggcaaggcggattgccaaggtctcgattgag
tcacgcatcaccctggacgaagaagaatacgtttcgcaatttgcgcccgacatgatggac
attgtgaaccagtggtgctgtggtgcgcggttctctgacatctgcaagataaccaccatg
tatgagggcagcatcatccgctccatgcgccgtctcgaggagctgctgcgacagatggcg
gcggcggcaaaggccattggcaacagcgaactggagcacaagtttgcagagggcatgtcc
ctcatcaagcgagacattgtctttgcaaactccctgtacctctga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (24)   

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