KEGG   Salpingoeca rosetta: PTSG_03452
Entry
PTSG_03452        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
sre  Salpingoeca rosetta
Pathway
sre03040  Spliceosome
sre04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTSG_03452
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    PTSG_03452
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sre03041]
    PTSG_03452
   04121 Ubiquitin system [BR:sre04121]
    PTSG_03452
   03400 DNA repair and recombination proteins [BR:sre03400]
    PTSG_03452
Enzymes [BR:sre01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     PTSG_03452
Spliceosome [BR:sre03041]
 Complex B
  Other components
   Prp19 complex
    PTSG_03452
 Complex C
   Prp19-CDC5 complex
    PTSG_03452
Ubiquitin system [BR:sre04121]
 Ubiquitin ligases (E3)
  U-box type E3
   PTSG_03452
DNA repair and recombination proteins [BR:sre03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    PTSG_03452
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 U-box Ge1_WD40 Nup160 zf-Nse IKI3 ELYS-bb CHAD
Other DBs
NCBI-GeneID: 16076623
NCBI-ProteinID: XP_004996037
UniProt: F2U586
Position
Unknown
AA seq 496 aa
MSLNCAISGAVPEHPVVSPKSGAVFERRVIEKHLRDNQTDPVSGDPLEVDELIDVKGGDV
VQPRAPNATSIPSLLKTFQDEWDAVMLESFELKKHVMELRQELTHSLYQHDASCRLIARL
TRERDQARQALVALEQQAPQMAQQAAAPAEAPAAAEEQEGPLPAEVVASIKATHKKLSKQ
RKKRFKAADFPAEENVNKYTCQKTHSGMHSSRSKAINDLAVHPTQPNIVLTAGQDKTALV
YDLNSEEILTTYKGHSKKVTACLLHPTQDVAITASADNTVHIWTTAGDTRHIIKAHKATV
EALSLHPTMDYVLAADAKGVWSFTDVLTGETLSTHKDEEAASGITCAQWHPDGTLFAVGT
KKNTVRVWNINQHQMLQSFEGHAAPITAIAFSESGLHLASASSDGVVKLWNLRTLECLNT
LELDAGTKVNALCFDDTGRFLAIGGSDLRIVNVSKWETVATHQDHSSNINALAWTAGDPG
TLLSAGADNAICVYTV
NT seq 1491 nt   +upstreamnt  +downstreamnt
atgtctctgaactgcgcaatttctggtgccgtgccagagcaccccgtggtgtccccaaag
tctggcgccgtgtttgagcggcgtgtgattgagaagcatctccgcgacaaccagacagac
cccgtctctggcgatccccttgaggtcgacgagctgatcgatgtcaaaggaggcgatgtc
gtccagcctcgtgcaccaaacgcaaccagtatcccatctctgctcaagacgttccaggat
gaatgggacgccgtcatgctggagtcctttgagctgaagaagcacgtcatggaacttcgc
caagagctgacacacagtctgtaccagcacgacgcatcttgccgtttgattgctcgtctc
acccgcgaacgcgaccaggcccgccaggcgctggttgcgcttgagcagcaggcgccgcag
atggcgcagcaggcggccgcccctgccgaggcccccgctgcagccgaggagcaagaagga
cccctgcccgcggaggttgtggccagcatcaaggcaacccacaaaaagctcagcaagcaa
cgcaagaagcggttcaaggctgccgactttcctgcagaggagaatgtgaacaagtacacg
tgccagaagacgcacagcggcatgcacagctcccgcagcaaggccatcaacgaccttgcc
gtgcacccgacacagcccaacattgtgctcaccgccggccaggataagacggcactcgtg
tacgacctcaactccgaggaaatcctgaccacatacaagggtcacagcaagaaggtgaca
gcgtgcctgctgcacccaacgcaggatgttgccatcactgccagtgcagacaacaccgtg
cacatttggacaaccgccggtgacacccgccacattatcaaggcgcacaaggcgactgtg
gaggctctgagcctgcacccgaccatggactacgtgctggctgcggatgccaagggcgtt
tggtcgtttacagatgtactgacgggcgagacgctgtcgacacacaaggacgaggaggct
gcgtcgggcatcacctgcgcccagtggcaccccgatggcaccctgtttgccgttggcaca
aagaagaacacggtgcgtgtttggaacatcaaccagcaccagatgcttcagtcgtttgag
ggccacgctgcgcccatcacggctattgccttttcggagtctggcctgcaccttgcctct
gcctcgagcgacggcgttgtgaagctgtggaacctgcgcactctcgagtgcctcaacacc
ctcgagctcgacgccggcaccaaggtgaatgcgctgtgctttgatgacacgggccgcttc
cttgcgattggcggcagcgatttgaggatagtgaatgtgtccaagtgggagacggtggcc
acccatcaggaccactcgtccaacatcaacgcgcttgcttggactgctggtgaccccggc
accctcctctcagccggtgcagacaacgccatctgcgtctacaccgtctag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (27)   

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