KEGG   Salpingoeca rosetta: PTSG_04133
Entry
PTSG_04133        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
sre  Salpingoeca rosetta
Pathway
sre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PTSG_04133
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_04133
Enzymes [BR:sre01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     PTSG_04133
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     PTSG_04133
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1
Other DBs
NCBI-GeneID: 16075606
NCBI-ProteinID: XP_004995028
UniProt: F2U6P2
Position
Unknown
AA seq 423 aa
MEEQTRTTETLSKGQELRVEAQPQQPVSVKVNFGKAELLGTELVAGKEYKLSSESQPIFT
WHGCSIAHTATTDAAYVAEETPMRQMLNLHAALENQRQKAHDSNGQGPRIMVVGPDFSGK
SSCCRILANYACRMYRTPILVDVDPNDNFFGMPCCVAAAPVTQPADAISGFVDATPVFFH
FGHTTVKGNSKFYAKAVERLGKTVQAKLSEDDKARASGVVVNCPTCPSDTLLQIQAAFNC
DVICVLDQERLVNELKRKLTASKVDGVKILKIPKSGGVIPLETEAKLRRTQERIRQYFYG
VPHHNPFMPHSVSIPFSRLRLFKVGAPEVPLDCLPIGAKRTEHELELEPILKFSVDLLRH
VVSVVGCEMTANSDQIKYSALCGFVVIESYNEERDSIKLLAPAPDRLPSTVFLLHETSFS
DTS
NT seq 1272 nt   +upstreamnt  +downstreamnt
atggaagaacaaacgcgaacgacagagacgctgagcaaagggcaggagctgcgagtggag
gctcagccacagcagccggtctccgtcaaggtcaactttggcaaagccgagctgctaggc
acagagcttgtcgcaggcaaggagtacaaattgagcagtgaaagtcagcccatcttcact
tggcacggctgctccatcgcacacaccgcaaccacggatgcagcttatgtcgcagaggaa
acgcccatgcggcagatgctgaacctgcacgcggctttggagaaccagagacaaaaagcg
catgattccaacggccagggcccaaggatcatggttgtgggtccagacttttccggcaag
tcgagctgctgtaggattcttgccaactacgcctgtcgcatgtaccgcacgcccatcctc
gtcgatgttgatccaaatgataatttctttggcatgccgtgctgtgttgccgctgcgcct
gtcacgcaaccagccgacgccatatcgggctttgttgatgcaacaccagtgtttttccac
tttggccacaccaccgtcaaggggaattcaaagttctatgcgaaagcggtggagcgcctt
ggcaagaccgtgcaggccaaactcagcgaggatgacaaggcgcgggcatctggggtcgtt
gtcaactgccccacgtgcccttccgatacgcttcttcagattcaggccgctttcaattgt
gatgtgatttgcgtcctggaccaagaacgcctcgtgaacgaactcaagcgcaagcttacc
gcttccaaggtggacggggtaaagattctcaaaattcccaagtctggtggtgtaatccca
ctggaaacagaggccaagctgcggcgaacacaggagcgcattcgccagtacttctatggc
gtcccccaccataacccgtttatgccccactcagtctccatccccttttcaagactgcgc
ctcttcaaagttggcgcaccggaggtgccactggattgtttgccgattggcgccaagcgc
accgaacacgaactcgagcttgagcccatcctcaagttctccgtcgacctgcttcggcac
gtggtttctgtggtgggatgcgagatgacggcaaactctgatcagatcaagtacagtgca
ttgtgtgggtttgtcgtcattgaaagctacaacgaggagcgcgattcgatcaagctgctg
gccccagcacccgaccgtcttccatccaccgtgtttctcttgcacgaaacatcattctct
gacacgtcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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