KEGG T01799: SELR

Selenomonas ruminantium: SELR_03940

Entry

SELR_03940 CDS T01799

Gene name

recD

Definition

putative exodeoxyribonuclease V alpha subunit

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

sri Selenomonas ruminantium

Pathway

sri03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:sri03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 HHH_5 AAA_11 Viral_helicase1 HHH HHH_2 PIF1 PhoH Helicase_RecD AAA_28 AAA_22 AAA UvrD_C cobW T2SE HHH_3 UPF0079 5_3_exonuc NTPase_1 AAA_25 AAA_16 AAA_12 Mg_chelatase AAA_5 UvrD-helicase

Other DBs

NCBI-GI:

383753222

NCBI-GeneID:

12023393

UniProt:

I0GMW5

Position

442004..444229

AA seq 741 aa
MAYNNDNEQMALGFAPQAGQEEIEGLVDSIIFASEDGRFAVFRLQPSGQNSRVTVTVSSE
PPLVGQQVYLTGSWITHPRFGQQFKAVSLRLEAPTSVEGIERFLASGVIDGVGPAMAKRL
VAKFGADTLDIIEQKPKLLETVEGIGKKTAAKIVASYTSQSELREIMLWLESHNVSGALA
ARIYKKYSSFALEVLENHPYKLAQEVEGIGFATADAIAASLGMAGDDENRVAAGIDYALQ
QISTSGHCCIPEEPLMDRTAKLLRVDSLRVGEVLKKQLKMQRLAVEEVGGTTLIYSPYLY
RAEKKVARKLLYLQRYADVLNVEDPEGMVAHWEEMTGLDLAQAQKEAMVAALTHGILVLT
GGPGTGKTTVVRGMIDVLEMAGLEILLGAPTGRAAKRLAEATGRKTMTVHRMLEAQGGRQ
DDGASMFAKDADEQLEADAIILDEVSMMDIVLMQHFLEAVPDGCHVILVGDVDQLPAVGP
GSVLKDILRSQVIPAVRLTEVYRQNEESTIVLNAHAINAGRLPLCKPAGDFQFWEIADPE
EVARNIVKLCVEILPKQGWNPLTDVQVLSPMHRQECGVENLNKLLQAALNPPAEYKAEYK
NSVRTFRLNDKVMQTKNNYSKMVFNGDIGFITAVESDHITVQFSEDLQVDYEKNELVELQ
LAYAMSVHKSQGSEYPVIILPLTAGHYIMLQRNLLYTAVTRASKQVILLGTKAALNTAVT
NDRTRKRYTLLAERLAGALNE

NT seq 2226 nt +upstreamnt +downstreamnt
gtggcatataacaacgataatgaacagatggcattgggctttgccccacaggctggccag
gaggaaatcgaaggcctggtggacagcattatctttgccagtgaggatggcagatttgcg
gtcttccgtctgcagccttccggtcagaacagccgtgttacggtgacggtcagctcagaa
ccgccgttggtggggcagcaggtgtatttgacggggagctggattacgcaccctcgtttt
gggcagcagttcaaggctgtgagcctgcggctggaagcccctaccagcgtggaaggcatt
gagcgtttcctggcttccggtgtgattgacggcgtgggccccgccatggccaaacggctg
gtggcaaaattcggtgccgatacgctggatatcatcgagcagaaaccgaaactgctggaa
acagtggagggcattggcaagaagacggcggccaagatcgtggcctcgtatacgtcgcag
tcagagctgcgggaaatcatgctttggctggaaagccataatgtatccggcgcgctggcg
gccaggatctataagaaatatagttcctttgctttggaagtgctggaaaatcacccgtac
aagctggcgcaggaagtagagggcattggctttgctaccgcagatgccattgccgccagc
ctcggtatggctggggatgatgaaaaccgcgtggcggcaggtattgattatgccctgcag
cagatttccaccagcggtcactgctgcattccggaagaaccactgatggaccgtacggcc
aaactgctgcgggtggattccctgcgggtgggtgaagtgctgaaaaagcagctgaaaatg
cagcggttggctgtggaagaggttggcggcacaacgctgatctattccccttatctttat
cgggcggagaaaaaagttgcccgcaaactcctgtatctgcagcgctatgccgatgtgctc
aatgtggaagatcccgaggggatggtggctcattgggaggaaatgaccggccttgatctg
gcccaggcacaaaaagaagccatggtggcggcgttaacccatggcattctggtgctgacc
ggcggccctggtacaggcaagacgacggtggtgcgggggatgatcgacgtgctggaaatg
gccggtctggaaatcctcttaggagcacctacgggacgtgcggcaaagcgattggctgag
gctacggggcgcaagaccatgacggtgcaccggatgctggaggcccagggcgggcggcag
gatgatggtgcttcgatgtttgccaaggacgcagacgagcagctggaagccgatgccatc
atcctcgacgaggtttccatgatggatatcgtcttgatgcaacattttctggaggctgtg
ccggatggctgccatgtgatcctggtgggggacgtggatcagctgccggcagtggggcct
ggttccgtgctcaaggatatcctgcgttcccaggtcatccctgctgtgcgcctcacggag
gtttaccgtcagaatgaggagagcaccatcgtcttgaatgcccatgccatcaatgccggc
cgtctgcccctttgcaagcccgccggggattttcagttctgggagatcgccgatcctgag
gaagtggcccgcaatatcgtgaagctctgtgtggagattttgcccaagcagggctggaat
ccactgacagatgtgcaggtgctttcgccgatgcaccgtcaggaatgcggcgtggaaaac
ctcaacaagctgttgcaggcggccttgaatccgccggctgagtataaagccgagtacaag
aacagcgtccgcacctttcgtctcaatgacaaggtgatgcagacgaagaataactacagc
aagatggtgttcaacggtgatatcggttttatcaccgctgtggagtctgaccatatcacc
gtgcagttcagtgaggatctgcaggtggattatgagaaaaatgaactggtggagctgcaa
ttggcttatgcgatgagtgtgcataaaagtcagggcagtgaatatcctgtgatcatcctg
cccctgactgccgggcattatatcatgttacagagaaatctcctttatacggcagtcacc
cgcgccagcaagcaggtcatcctgttagggacgaaggcagccctgaataccgcggtcacc
aatgaccgtacccgcaagcgctataccctgctggctgaacgtctggcaggcgccttgaat
gaataa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (28)   
   Pfam (28)   
All databases (37)   

Download RDF

DBGET integrated database retrieval system