KEGG   Serratia plymuthica 4Rx13: SOD_c03690
Entry
SOD_c03690        CDS       T02710                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
srl  Serratia plymuthica 4Rx13
Pathway
srl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:srl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SOD_c03690 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:srl03019]
    SOD_c03690 (pnp)
   03016 Transfer RNA biogenesis [BR:srl03016]
    SOD_c03690 (pnp)
Enzymes [BR:srl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     SOD_c03690 (pnp)
Messenger RNA biogenesis [BR:srl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SOD_c03690 (pnp)
Transfer RNA biogenesis [BR:srl03016]
 Prokaryotic type
  tRNA degradation factors
   SOD_c03690 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 S1_2 aRib KH_2 SLS1_KH2 DUF6226 UPF0181 DUF4172
Other DBs
NCBI-ProteinID: AGO53380
Position
401300..403360
AA seq 686 aa
MMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRRE
GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS
GIPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVLMVESEADVLSEDQM
LGAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALHARVAELAESRLGDAYHIT
EKQERYAQVDAIKSSVVEALLAQDESLDASEIQDILGSVEKNVVRSRVLRGEPRIDGREK
DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTDSFLFHYN
FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITESNGSSSMA
SVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDHLGDMDFKVAGSRDG
ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISQFAPRIHTIRIN
PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIRRIEEITAEIEV
GRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR
QGRVRLSIKEATAPEAGSSAPAPEAE
NT seq 2061 nt   +upstreamnt  +downstreamnt
atgatggctcgtcaggccaccgccgccgttatggtgagcatggatgacaccgcagtattc
gttaccgtagttggccagaaaaaagccaagccaggccaaagcttcttcccactgaccgtt
aactatcaggagcgtacttacgctgctggtcgtatcccgggcagcttcttccgtcgtgaa
ggccgtccgagcgaaggcgaaaccctgacctcacgcctgattgaccgtccgatccgtcca
ctgttcccggacagcttcctgaatgaagtgcaagtgatcgcgaccgtagtttccgttaac
ccgcaggtaaacccggacatcgttgcgatgatcggcgcttctgctgccctgagcctgtcc
ggtattccgttcaacggcccaatcggcgctgcacgcgtgggttacatcaacaatcagtac
gtgctgaacccaacgaccgacgagctgaaagaaagcagcctggacttggtggttgccggt
accgctggcgcagtgctgatggttgaatccgaagctgacgttctgagcgaagatcagatg
ctgggcgctgtggtctttggccatgagcaacagcagattgttatcgaaaacatcaactcc
ctggttgccgaagccggtaagcctaagtgggactggcaggcacctgcaatcaacgaagcg
ctgcacgcgcgcgttgcagaactggcagaaagccgtctgggcgacgcttatcacatcacc
gaaaaacaagagcgttacgctcaggtagatgcgatcaagagcagcgtagttgaagccctg
ctggcgcaggacgagagcctggacgcgtctgaaattcaggacatcctgggcagcgttgag
aaaaacgttgtacgtagccgcgtgctgcgtggcgagccgcgtatcgacggccgtgaaaaa
gacatgattcgtggtctggacgtgcgcaccggcgtgctgccgcgtacccacggttccgca
ctgttcacccgtggcgagactcaggctctggttactgcaacgctgggcaccgcccgtgac
gcgcaaaacctggacgagctgatgggtgagaaaaccgacagcttcctgttccactacaac
ttccctccgtactccgtaggtgagaccggtatggtgggttcgcctaaacgtcgtgaaatt
ggtcacggtcgcctggcgaaacgcggtgtattggctatgatgcctaaaccagaagatttc
ccgtacacggtgcgtgtggtttccgagatcaccgaatccaacggttcttcttcaatggct
tctgtctgcggtgcctctctggcgctgatggacgcaggcgtgccaatcaaggcagccgtt
gcgggtatcgcaatgggcctggttaaagaacaagataactttgtcgttctgtccgacatt
ctgggtgacgaagatcacttgggcgacatggacttcaaagtagccggtagccgtgacggt
attaccgcgctgcagatggacattaaaattgaaggcatcacccgcgaaatcatgcaggtg
gcactgaaccaggccaagggcgcgcgtctgcacatcctgggcgtgatggaacaggctatc
agcaccccgcgtggcgatatctctcagttcgcaccacgtatccacactatccgaatcaac
ccggacaagatcaaagacgtgatcggtaaaggcggctctgtcatccgtgcgctgaccgaa
gagaccggtactaccatcgaaatcgaagatgatggtacggttaaaattgctgctaccgac
ggtgagaaagccaagttcgctatccgccgcatcgaagagatcaccgcagagatcgaagtg
ggccgtatttaccaaggtaaagtgacccgtatcgttgatttcggtgcattcgtggcgatc
ggcggcggtaaagaaggtctggtgcacatctctcaaatcgctgacaagcgcgttgagaaa
gtgaccgactatctgcagatgggtcaggaagtaccggttaaggtactggaagttgaccgt
cagggccgtgtgcgtctgagcatcaaagaagctacagcgccagaagcaggttcatctgca
cctgcgcctgaagcagaataa

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