KEGG   Streptomyces rubrolavendulae: A4G23_03321
Entry
A4G23_03321       CDS       T04616                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
srn  Streptomyces rubrolavendulae
Pathway
srn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:srn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A4G23_03321 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:srn03021]
    A4G23_03321 (rpoB)
   03400 DNA repair and recombination proteins [BR:srn03400]
    A4G23_03321 (rpoB)
Enzymes [BR:srn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A4G23_03321 (rpoB)
Transcription machinery [BR:srn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A4G23_03321 (rpoB)
DNA repair and recombination proteins [BR:srn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A4G23_03321 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Peptidase_M23
Other DBs
NCBI-ProteinID: AOT60446
UniProt: A0A1D8G4Q5
Position
3852560..3856045
AA seq 1161 aa
MAASRNASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNAAWKARVEA
ALENGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILQEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGADEPLDAGVLTVDDVIATIKYLVKLHAGETETVGENGSTIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRKVIDGRVTDEVDYLTADEEDRFVIAQANAGLTEDMRF
AENRVLVRRRGGEVDYVAGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIRSEAPLVGTGMEYRSAVDAGDVVKAEKDGVVQELSADYITVANDDGTYITYRLAK
FARSNQGTSVNQKVVVAEGDRVIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWDVSGLADDWAQRLQSIGADRVEPRTNVATP
VFDGAREDELAGLLEHTLPNRDGDRLMLPSGKARLFDGRSGEPFPDPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq 3486 nt   +upstreamnt  +downstreamnt
ttggccgcctcgcgcaacgcctcgaccgcgaatacgaacaacggcgcaagcaccgccccg
ctgcgcatctcctttgcaaagatcaaggagcccctcgaggttccgaacctcctcgcgctg
cagaccgagagctttgactggctgctcggcaacgccgcgtggaaggctcgtgtcgaggcg
gctctcgagaacggacaggacgtccccaccaagtccggtctggaagagatcttcgaggag
atctcgccgatcgaggacttctccgggtcgatgtcgctgaccttccgcgaccaccgcttc
gagcccccgaagaactccatcgacgagtgcaaggagcgcgacttcacgtacgccgcgccg
ctcttcgtcacggccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtcgtgtcgcagctcgtccgctcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccctcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcag
tccgtgaccgtcctcctcaaggcgctcggctggaccaccgagcagatcctgcaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctccgtccgggcgagcccccgacgcgtgaggccgcg
cagacgctgctcgagaacctctacttcaacccgaagcgctacgacctggccaaggtcggc
cgctacaaggtcaacaagaagctcggcgccgacgagccgctggacgccggcgtcctgacc
gtcgacgacgtcatcgcgacgatcaagtacctggtcaagctgcacgcgggcgagaccgag
accgtcggtgagaacggctcgacgatcgtcgtcgagacggacgacatcgaccacttcggc
aaccgccgcctgcgcaacgtcggcgagctcatccagaaccaggtccgcacgggtctggcg
cggatggagcgcgtcgtccgcgagcgcatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtccgggctgacgcacaagcgtcgt
ctgtccgcgctcggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgagac
gtgcacccgtcccactacggacgcatgtgcccgatcgagacccccgaaggcccgaacatc
ggtctgatcggctcgctcgcctcctacggccgtgtcaacgccttcggcttcgtcgagacg
ccgtaccgcaaggtcatcgacggccgggtcaccgacgaggtcgactacctgaccgccgac
gaggaggaccgcttcgtcatcgcccaggccaacgccggcctgaccgaggacatgcgcttc
gccgagaaccgcgtcctggtgcgccgccgcggcggcgaggtcgactacgtcgccggggac
gacgtggactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
cccttcctcgagcacgacgacgccaaccgcgccctcatgggcgcgaacatgatgcgccag
gccgtgccgctgatccgctcggaggccccgctcgtcggcaccggcatggagtaccgctcc
gccgtcgacgccggcgacgtggtcaaggccgagaaggacggtgtcgtccaggagctctcc
gcggactacatcaccgtcgccaacgacgacggcacgtacatcacgtaccgcctggccaag
ttcgcccgctccaaccagggcacctcggtcaaccagaaggtcgtcgtcgccgagggcgac
cgggtcatcgagggccaggtcctcgccgacggcccggccaccgagaacggcgagatggcg
ctcggcaagaacctcctcgtggcgttcatgccgtgggagggccacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacacgaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgcatcggtgcc
gaggtcgtcgccggcgacatcctggtcggcaaggtcaccccgaagggcgagaccgagctg
accccggaggagcgcctgctccgcgcgatcttcggtgagaaggcccgtgaggtccgcgac
acctcgctgaaggtgccgcacggcgagaccggcaaggtcatcggcgtgcgcgtcttcgac
cgcgaggagggcgacgagctgcccccgggcgtgaaccagctggtccgcgtctacgtggcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgccacggcaacaagggcgtc
atctccaagatcctgccgatcgaggacatgccgttcctggaggacggcacccccgtcgac
atcatcctcaacccgctcggtgtgccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccagggctgggacgtctccgggctcgccgacgactgggcc
cagcggctccagtccatcggcgccgaccgcgtcgagccccgcaccaacgtcgcgaccccg
gtcttcgacggtgcccgcgaggacgagctggccggcctgctggagcacaccctcccgaac
cgcgacggcgaccgcctgatgctgccgtccggcaaggcgcgcctgttcgacggccgctcc
ggcgagccgttcccggacccgatctcggtcgggtacatgtacatcctcaagctccaccac
ctggtcgacgacaagctgcacgcccggtcgaccggcccgtactcgatgatcacccagcag
ccgctgggcggtaaggctcagttcggtggccagcgcttcggtgagatggaggtgtgggcg
ctggaggcttacggcgccgcgtacgccctccaggagctgctgaccatcaagtccgacgat
gtcaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatcccggagccc
ggcatcccggagtccttcaaggtgctcatcaaggagatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgctgcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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