KEGG T04916: 107717346

Sinocyclocheilus rhinocerous: 107717346

Entry

107717346         CDS       T04916

Symbol

ythdc2

Name

(RefSeq) probable ATP-dependent RNA helicase YTHDC2

K20099

ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]

Organism

srx Sinocyclocheilus rhinocerous

Brite

KEGG Orthology (KO) [BR:srx00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:srx03041]
    107717346 (ythdc2)
Spliceosome [BR:srx03041]
Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    107717346 (ythdc2)

SSDB

Motif

Pfam:

YTH Helicase_C HA2_C OB_NTP_bind DEAD HA2_N Ank_2 AAA_19 ATPase nSTAND3 PhoH AAA_22 AAA_16 Ank_4 ABC_tran

Other DBs

NCBI-GeneID:

107717346

NCBI-ProteinID:

XP_016379540

Position

Unknown

AA seq 1272 aa
MTCNLSHNSKHMVQSLLQRFPITNKERSELQPRTERAVFTSPDASDSKSRTSGRLSHGIS
QVPQKRGPSELDCFRRALPVFERQEEIIQTIRENQVVLVLGETGSGKTTQIPQFLLDDCC
RSGIPCRIFCTQPRRLATIAVAERVAAERGEKIGQTIGYQIRLESRVSPKTLLTFCTSGV
LLRTLMSGDEALSTVTHVIVDEVHERDGLTDFLLTKMKELVQKTPSLKLILSSATLDVNL
FVRYFGACPVIHIKGCPYEVKQLFLEDILRTTGYTNKDMMKYKKEAQKEERQQTSLTEWC
DARLDVLQPEAPREKTHTCVLQENDLLDDGGDSVFSQMSEKDVATLEPWLLREMDACISN
IFLNQDADAFVQLFNLILNENISVDYRHSETSATPLMVSSGRGFLSQMEQLLSMGANANI
KASNGWTALDWAKHFNQTEAVDLLESHIWCVEAGQLDESSLVQTAASELNPEDQELLKAY
HHSFDDEKVDLDLILHLLSSICQSSDEGAVLIFLPGYDEIVSLRDRILFDDKRFTDHQQR
FQVFILHSSMQTSDQKKVLKNTPKGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAYD
ALSNVTMLKMVWISKASALQRKGRAGRCRPGVCFHLFSRLRFNNMLEHQIPQLLRMPLQV
LCLHTKLLAPVTCPIAEFLSKAPEPPHLNTVKHAVQMLKTIDAMDPWENLTELGYHLADL
PVEPHLGKMVLCAVVLKCLDPILTIACTLAHRDPFVLPAQAAQKRAAMLCRKRFTANTFS
DHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRATGFVRARGG
GDIRDVNQNSENWAVVKAALVAGMHPNLIHVERDSLSLMGSREKKVRFHPTSVLSQPQYK
KIPPANGQAAAVESLPTDWLIYDEMTRAHRIASVRCCSVVTPLTVAIFAGSAKLPSSALQ
EPAVHRGADAVNDSSDSEVEDRSSARLAHISIDDWLHFKLHRETAELMFGLRQRWQSLFL
RRIRSPSKSCSQLDEATIRSLVSVLLAEEQSAGLQQPTGIGQRPRPMTSDDPPQTPASRS
AAEQDRSSPDRPRLASQLKNHRALHCKHLGDESGPVKSADGPSSPSSGTRCSSPLRSSVC
YFIMKSSNMRNIDLSQQRGIWSTTPNNELKLTRAFVESSAVFLIFSVQGSGHFQGYARMA
SAVSGERCLDWGSTGLGGVFGVEWIRKEGLPFQLTQQLLNPWNDNKRVQISRDAQELEPQ
TGSQLLQLWERI

NT seq 3819 nt +upstreamnt +downstreamnt
atgacctgtaacctttctcacaactccaaacacatggtgcagagcctcctgcagaggttc
cccatcaccaataaagagcgcagtgagctgcagccgcgcacagagagagccgtcttcact
tctcctgacgccagcgacagtaaaagcaggaccagcggtcgtctgagtcacggtatttct
caggttcctcagaaacgaggcccgtctgaactggactgtttccggagagcgctgcccgtg
tttgaacgccaggaggagatcatccaaaccatcagggagaaccaggtggtgctggttttg
ggtgagaccggctccggcaaaaccacacagatcccacagttcctgctggatgactgctgt
cggagcgggattccctgccggatcttctgcactcagcccaggaggctggcgaccatcgct
gtggcggagcgcgtggcggccgagcgcggcgagaagatcggacagaccatcggctatcag
atccgtctggagagcagagtttcccctaaaaccctgctgacgttttgcacgagtggagtt
ctgctgcggacgctgatgtccggagacgaagccctgtccaccgtcacgcatgtcatcgtg
gacgaggtgcacgagcgagacggcctgaccgacttcttactcacgaagatgaaggagctt
gtccagaagacgccgtcgctgaagctgatcctttccagcgctactctggacgtcaatctg
tttgtcagatacttcggagcctgtcctgttattcacatcaaaggttgtccatatgaggtc
aagcagctgtttctggaggacatcctgcggaccaccggctacacaaacaaagacatgatg
aagtacaagaaggaggcgcagaaagaggagagacagcagacgtctctgacagagtggtgt
gacgcccgtctagacgtcttacagccggaggctccgagggaaaagacacacacttgtgtc
ctgcaggagaacgacctgctggatgacggcggcgacagtgtcttcagtcagatgagcgag
aaggacgtggccacactggagccctggctgctcagagaaatggacgcctgcatctccaac
atcttcttgaaccaagatgccgatgccttcgtgcagctcttcaatctgatcctgaacgag
aacatcagcgtggattacagacacagcgagacgagcgccacgccgctgatggtgtcttcc
ggacggggttttctcagccagatggagcagctcctcagcatgggtgcgaacgccaacatc
aaagcctccaacggctggacggctcttgactgggccaaacacttcaatcaaactgaggct
gtagatctgctggagtctcacatatggtgtgttgaagcaggtcagctggacgagtcgtct
ctggttcagacggctgcatcagagctgaatcctgaggaccaggagcttctcaaagcgtat
catcatagcttcgacgatgagaaagtcgacctggatctcatcctgcatctgctctccagc
atctgccagagctctgacgagggcgcagtgttgatatttctgccgggctacgatgagatt
gtctctctgagagatcgcatcctctttgatgataaaaggtttacagatcaccagcaaagg
tttcaggtgttcatactacactctagtatgcagacgtcagaccagaagaaggttttgaag
aacacgcctaaaggtgttcgcaaaataattctctcgaccaacatcgcagagaccagtatt
acagtcaacgatgttgtttttgtcatcgactccggcaaagttaaagagaaagcctatgac
gctctgagtaacgtgaccatgctgaagatggtttggatatcgaaggccagcgctctgcag
aggaagggcagagcgggccgctgcagaccaggcgtctgtttccatctcttcagccgtctg
aggttcaacaacatgctggagcatcagattcctcagctgctgcgcatgccgctacaggta
ctgtgtctgcacactaaactgctggctcccgtcacctgtccgatcgctgagttcctgtct
aaagcaccggagccacctcacctgaacacagtcaaacacgccgtacagatgctgaagacc
atcgacgctatggacccctgggagaacctgacggagctgggttatcacctcgctgatctg
cccgtggagccacatttagggaagatggttctgtgtgcggtggtgctgaagtgtttggac
cccatcctcaccatcgcctgcacactcgcccacagagaccccttcgttcttcccgctcaa
gccgctcagaagcgcgccgccatgctgtgcagaaaacgcttcaccgccaacaccttcagc
gaccacatggctctgctccgcgcatttcaggcctggcagaaggctcgcagtgatggctgg
gaaagagcgttctgcgagaagaacttcctctctcaggccacaatggagatcatcgtcggg
atgcgaacacaacttttgggacagcttcgagctacagggttcgtgcgagcgagaggcggc
ggtgatatccgtgatgttaaccagaactccgagaactgggccgtagtgaaagctgctctg
gtcgctggcatgcatcccaacctgatccatgtggagcgggacagtctgagcctcatgggc
tccagagagaagaaggtccgcttccacccgacctctgtcctcagccagccgcagtacaag
aagatccctccagccaatggccaggcggcagcagtggagtccctgcccactgattggctg
atttatgatgagatgacccgcgctcacaggatcgccagtgtcaggtgctgctctgtggtc
acgcccctcaccgtcgccatcttcgcaggaagtgccaaactcccaagctccgccctacag
gaacccgccgtccacagaggagctgacgctgtgaatgacagcagtgacagtgaggtggag
gatcgctcgagcgctcgtctggctcacatcagcattgacgactggctccacttcaaactc
caccgagagacggcggagctgatgttcggtctgaggcagcgctggcagagtctgttcctg
cggcggatccgctctccgtctaagtcctgctctcagctggacgaggccaccatccgctcg
ctggtgtcggttctgttggccgaggagcagagcgcaggcctgcagcagcccaccggcatc
ggccagagacctcgacctatgacctccgacgatcctccgcagacaccagccagccgcagc
gcagcggagcaggaccgcagcagcccagacaggcctcggctggcgtctcagctgaagaat
cacagagctcttcactgcaaacacctgggagacgagagcggccccgtgaagagcgcagac
gggccctcgtccccgtcctcgggaacacgctgctcgtctccgctgcgatcgagcgtctgc
tacttcatcatgaagagcagcaacatgaggaacatcgatctgtcccagcagaggggaatc
tggtccacgacgcccaacaacgagctcaagctcacgcgagccttcgtcgagagcagcgcc
gtcttcctcatcttctccgttcagggatccggacacttccagggttacgcgcgcatggca
tcggcggtcagcggcgagcgctgtctggactggggttcgaccggtctgggtggtgtgttc
ggggtggaatggatccgtaaggagggtctgccgttccagctcacgcagcagctgctgaac
ccctggaacgacaacaagagagtgcagatcagccgagacgctcaggaactggagccgcag
acaggaagtcagttactgcagctctgggagcgaatctga

All links

Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (25)   

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