KEGG   Sinocyclocheilus rhinocerous: 107729868
Entry
107729868         CDS       T04916                                 
Name
(RefSeq) collagen alpha-1(V) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:srx00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107729868
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:srx00536]
    107729868
Glycosaminoglycan binding proteins [BR:srx00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107729868
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3
Other DBs
NCBI-GeneID: 107729868
NCBI-ProteinID: XP_016396074
Position
Unknown
AA seq 2031 aa
MSRFGCFVKASLTLPLNLCFSLLSHQACTVPTALCVSLSSCLTKEPSVLCATPPPSSTPK
WYIPSPPHPPPAVRLIVRLFSSPSAVVRPQSGIITVQCRRHLKLMYPIDVLRVLQLPSLP
EGVQKVPGFCTSRRSGTPDHAYRITKKAQISAPTKQLFSGRFPENFSIMTLVKAKAGLQA
FLMSIYNEQGVQQLGLELGRSPIFLYEDQNRKPAPEDYPLFKAVNLADGKWHRIAISVQK
KNITLILDCKNRITKTLARSNNPVLDTKGITVFGARLLDEEVFQGEIQQLLIASNPQAAY
DFCEHYSPDCDSPLPKVQSQDPNSFEGKANNGKADKPKTAPAKAAKAKPTPKPKAKPISK
TKPTLASKLASKPKATPAPKIENKKKANDNGKNNGQAKVNGNGKSNGNGKDANGKAKAGS
NGKANGNGKAAVEKKAKGEAKANGNGAKTAKTEKAAVTKVTVAKKSETTAKKAETRPQPA
KDKTKANAVPKAKPKATKPVVQKFQTKVAKTQKPVAFKPTPAPLPLPPKPKVLDVNNVKS
MSKNFPPFDKAAVSGTTMSSPEIPKKKPTNGYQQDVDPAYSEADHTPTETDYYYTVEEEA
SPQPESDLTGYEETINQVDETVGAEEVDATKTGGEGVSQMPDEPFTEEYITSDFGTKEYD
YSYRDYNEPIIESKTEDTFGPALSAVTDEGGAFVRAQKGEKGDPAVLEPFRFGQSAGEKG
PIASAQEDQVQAILSQARLAMKGPPGPMGLTGRPGPTGTPGSPGLRGESGDHGPQGPRGP
HGLSGPPGKSGRRGRAGADGARGMPGESGIKGDRGFDGLPGLPGDKGYRGQTGGMGPTGP
PGEDGERGDDGDVGPRGLPGEPGPRGLLGPKGPSGLPGPPGVRGNDGPHGPKGSLGPQGE
PGPPGQQGAPGTQGMAGPQGAIGPSGEKGPTGKPGLPGMPGGDGPPGHPGKEGPAGTKGN
QGPNGPQGSIGYPGPRGIKGAQGIRGLKGHKGEKGEDGFLGIKGDFGVKGERGEVGMPGP
RGEDGPEGPKGRVGPLGEIGPIGLVGEKGKLGVPGLPGYPGRQGIKGSLGFPGFPGANGE
KGARGLIGKTGPRGQRGPTGPRGQRGPRGATGKSGAKGGSGSDGPSGPPGERGLTGLQGP
NGFPGPKGPPGPPGKDGLPGHPGQRGEAGFQGKTGPPGPPGVVGPQGPSGETGPMGERGH
SGPPGPPGEQGLSGPSGKEGTKGDPGPSGGPGKDGPPGLRGFPGERGLPGTPGTGGLKGN
EGPAGPPGPAGSPGERGAAGTAGTVGPPGRPGPQGPPGAAGEKGVPGEKGPIGPAGRDGI
QGPVGLPGPAGPPGTAGEDGDKGEVGEPGQKGAKGSKGEHGPPGPLGPMGPVGQPGAAGA
DGETGARGQQGPFGAKGDDGTRGFPGPPGPIGLQGLPGPAGEKGEMGDVGPMGPPGPPGP
RGPAGPNGADGPQGPPGGLGNPGPIGEKGEPGESGPPGLGGEPGKMGPRGERGEKGEAGQ
PGTSGPAGGKGPHGDDGPKGNPGPVGFPGDPGPPGEVGPRGQDGAKGERGEDGEQGEAGS
PGPTGENGPPGPPGKRGPPGTRGPEGRQGEKGSKGDSGALGPPGKTGPVGPQGQPGKPGT
EGLRGLPGTVGEQGAPGAAGQKGPPGPMGPPGLAGLRGDPGAKGEKGHPGMLGLIGPPGE
QGEKGDRGMPGPQGSSGPKGETGMSGGTGPLGPAGPAGMPGPRGIKGAKGATGGGGPKGE
KGVQGPPGPPGPPGDVIQPLPIQIPKKSKRSVDGSKMLSETDTEAADGTGAEFLTGNKGM
EEIFGSLNSLRQEIESMRFPLGTQESPARTCQDLHLSQPDLKDGEYWIDPNQGCARDSFK
VYCNFTAGGETCLYPSKAVENVKMNTWPKEKPGSWFSQFAKGSKFSYVDWSGEPVGVVQL
GFLRLLSVQARQNLTYHCQRSVAWADLTADSGYQRALHFQGANDEELSYETSPYIKALVD
GCSYRKGLDRTVLEVNTPQVEQLPLLDIRISDFGEDNQKFGFEVGPVCFLG
NT seq 6096 nt   +upstreamnt  +downstreamnt
atgtccaggtttggttgttttgtgaaggcctcactcactctgcctctcaatctgtgcttc
tctctcctctcccatcaggcttgtactgtacctacagctctctgtgtgtctctctcttcc
tgcctcacaaaagagccctctgttctctgcgccaccccacccccttcctcaacacccaag
tggtacattccctctcctcctcatcctccccctgcagtgcgtctcattgtgaggctcttc
tcctcaccttcagctgtagtccggccacaaagcggcattattacggtacagtgccgcaga
cacctgaagctgatgtatccgatagatgttttgcgggtgctgcagttgccttccctccct
gaaggtgtgcagaaggtcccgggtttctgcacctctcgccggtccggcactcctgatcat
gcctaccgcatcactaagaaagcccagatctctgcccccaccaaacaactattctcagga
cgtttcccggagaacttctccatcatgactctggtaaaggccaaggctggtcttcaggcc
ttcctgatgtccatctataatgagcagggtgtccagcagctcggtctagagttgggacgc
tcgcccatcttcctgtatgaggaccagaatcgcaaacccgccccagaggactacccactg
tttaaagcggtcaacctggctgatggcaagtggcaccgcattgccatttctgtgcagaag
aagaacatcactctgatccttgactgcaagaatcgcattacaaaaactctggcacgtagc
aacaacccagtcttggacaccaagggcatcactgtctttggagcccgtcttctggatgag
gaggtcttccagggtgagatccagcagctgctgatcgcatccaatcctcaggccgcttat
gacttctgcgagcactacagccccgactgtgactcccctctgcccaaagtccagtcccag
gacccaaacagcttcgagggaaaggcgaacaacggcaaagctgataagccaaaaactgcc
ccagccaaagctgctaaagccaagccaactccaaagccgaaggccaaacctatctcaaag
acaaaacctactttagcttctaaactagcatccaaaccaaaagcaacaccggccccaaag
attgaaaacaaaaagaaggcaaatgacaatggaaaaaataacggtcaagctaaagtaaat
ggcaatggcaaaagcaatgggaatgggaaagatgctaatggtaaggctaaggctggcagc
aatggcaaagccaatggcaatgggaaggcagctgtggagaaaaaagcaaaaggagaagct
aaagctaatggcaatggtgcgaaaacagcgaagactgaaaaggcagcagtgaccaaagta
acagtagcaaagaagtcagagacaactgcgaagaaagcagagaccagaccacaaccagcc
aaagacaaaacaaaagccaatgcagtacctaaagcaaagcctaaagcgaccaaacctgtg
gtacaaaagtttcagaccaaagtcgctaaaactcaaaaacctgttgcttttaaacccacc
cctgcgcctttgcctctccctccaaagcctaaggtcttggatgtcaataacgtcaaatca
atgtccaaaaatttcccacccttcgacaaggctgctgtgagtggcacgaccatgtcttct
ccagaaatacccaagaagaaacccaccaatggttatcaacaggacgtagatcctgcttac
tcagaggctgaccacacccccacagagaccgattattattacacagtagaagaagaggcg
agcccacagccagagagtgatctgactggatatgaagaaaccattaatcaggttgacgag
actgttggcgctgaggaagtagatgcgaccaagacaggtggtgaaggggtgtctcaaatg
ccagacgagcccttcactgaggagtacattacaagcgactttggaacaaaggagtatgac
tattcctacagggactacaatgagcccatcatcgaaagcaagacggaagacacctttggc
cctgccctgtccgctgtgacagatgagggaggtgccttcgtgcgagcccagaagggagag
aagggagaccctgctgtccttgaacctttccgtttcggacagagtgctggcgaaaaaggg
cccattgcctcggcacaggaggaccaagttcaagccatcctgtctcaggctcggctggct
atgaaaggcccaccagggccaatgggtttaaccggccgtccaggacctacgggaacacct
ggaagtcctggcttaaggggagaaagtggggaccatggtcctcagggccccagaggtcct
catggattgtctggtcctcctggtaaatctggtcggaggggtcgggctggtgctgatgga
gccagagggatgccaggagagtctggaattaagggcgaccgtggctttgatggccttcct
ggtttgcctggtgacaagggttatcgtggtcaaactggaggaatgggacccacaggaccc
ccaggagaggacggagaaaggggagacgatggagacgttggacctagaggtcttcccggc
gaaccggggccccgtgggttgctggggcctaaagggccttctggtcttcctggacctcct
ggtgttcgtggaaatgatggtccacatggtccaaaaggaagcttggggcctcaaggagag
cctggtcctccaggacagcagggggctccaggaacacagggaatggcaggtccacagggt
gctattggaccatcaggagagaaagggcccacaggaaagcctggtctaccaggaatgccc
ggaggtgacggtcctccaggtcatcccggaaaggaaggccccgctggaaccaaaggaaat
cagggtcctaatggtcctcaggggtctattggctatcctggccctcggggaattaaggga
gctcaaggtatccgtggactgaagggccataagggagagaagggagaggacggattcctt
ggaatcaaaggagactttggtgtgaagggagagaggggagaggtgggaatgcctggccca
agaggagaggacggtcctgaggggccgaagggtcgtgtcggtccccttggtgaaatcggt
cctattggcctggtgggagagaagggtaaacttggtgtgcctggacttcctggatatcct
ggaaggcaaggaattaagggctccctgggtttcccaggattccctggtgcaaatggcgag
aaaggcgcgaggggtttgattggaaaaactggaccaagaggacagagagggccgacaggt
cccagagggcagagaggaccccgtggggcaactggaaaatcaggtgctaagggtggatct
ggcagtgacgggccttctggaccacctggggagagaggactaactggacttcaaggtcca
aatggatttcctgggccgaagggacctcctggacctccagggaaagatggactgcctgga
caccctggacagagaggcgaagctggtttccaaggcaaaactggaccacctgggccaccg
ggagttgttggaccacagggtccctctggtgagactggaccgatgggtgagcgtggtcac
tcaggacccccaggaccacccggtgagcaaggtctttctgggccttctggtaaagaggga
accaaaggagatcccggtccctccggcggccccggtaaagacggaccccctggactgaga
ggattcccaggagagagaggactgccaggaactccaggcactggaggactgaaaggaaat
gaaggccctgctggaccacccgggcctgctggatcacctggggagagaggagcagctggc
accgcaggtactgtcggcccacctggacgacctggacctcaggggccccctggagctgcg
ggagagaagggagtgccaggagagaaaggtccgattggtccagctggtcgcgacggcatc
caaggcccagttggtctcccaggccctgctggacctccaggtactgctggagaggatgga
gacaagggtgaggttggagagccaggacaaaagggagctaaaggatccaagggagaacat
ggtcctcctggtccacttgggccaatgggtcctgttggacagcctggtgcagctggtgct
gatggtgagacaggtgcgaggggtcaacagggaccatttggcgctaagggagatgatggg
acaagagggttcccaggtcctccaggccccatcggactgcagggtttgccaggcccagct
ggagaaaaaggagagatgggagatgttggtccaatgggtcctcctggtcccccaggtcca
cgtggtccagctggtcctaatggtgctgatggtcctcaaggtcctccaggaggtttgggt
aatccaggtcccataggagagaagggtgagcctggtgaatccggaccacctggtcttggt
ggagagccaggaaaaatgggcccgagaggagagcgtggtgagaagggagaggctgggcag
ccgggcacctctggtcctgctggtggaaaaggaccccatggagatgacggacccaaagga
aaccctggtcctgttggtttccctggtgatcccggtccccctggtgaagttggaccacga
ggccaagatggagcaaagggtgaaagaggagaggatggagaacaaggagaagctggttca
cctggaccaaccggtgagaacggaccacctggacctccaggaaagagaggtcctccaggc
acaaggggaccggagggtcgtcagggagaaaagggaagcaagggggattcaggtgccctt
ggccctccaggaaagacaggccctgtggggccacagggtcaaccaggaaaaccaggaact
gagggtctaagagggttgcctggaacagtgggtgagcaaggtgctccaggtgcagctggc
cagaagggacctcctggtccaatgggtcctccaggtttggcaggtcttcgtggtgacccc
ggtgctaagggtgagaagggacatccaggtatgcttggtctgattgggcctccaggagaa
caaggagagaagggagaccgaggcatgcctggaccacagggatcttcaggacccaaggga
gaaacgggtatgtctggaggaactggtcctcttggtcctgcaggtcctgctggtatgcct
ggtccgaggggtatcaaaggagctaaaggtgccactggcggaggtggtcctaaaggagaa
aagggtgtacaaggaccaccaggaccacctggaccccctggagatgtcatccagccgctg
cccattcagatccctaagaagtccaagcgctccgtcgacggcagtaagatgctctctgag
actgacactgaggctgccgacggcacgggtgcagagttcctgactggtaacaaaggaatg
gaggagatcttcggatcgctcaattccctgcgccaggagatcgagagcatgcgcttcccg
ctgggaacacaggaaagcccggcccgcacctgccaggacctccacctcagccaaccagat
ctgaaagacggcgagtactggattgatccaaatcaaggctgcgctcgggactcgttcaag
gtttactgtaacttcactgccggtggagagacgtgcttgtatcccagcaaagctgtggaa
aatgtgaagatgaacacttggccaaaggagaagcctgggtcctggtttagtcagtttgca
aagggcagcaagttttcatatgttgactggagtggagagcccgtgggtgttgtccagctg
ggattcctgcggttgctcagcgttcaggctcgtcaaaacctgacctaccactgccagcga
tcagtggcctgggcggacctcactgccgacagcggctaccagagggcgctacacttccag
ggtgccaacgatgaagagctcagctacgagaccagcccctacatcaaagccctcgtcgac
ggctgctcttatcgtaaaggcttggacaggacagtgctggaggtgaacacacctcaggtg
gagcagctccctctgctggacatcaggatctcagactttggggaggacaatcagaaattt
ggttttgaagtgggacctgtctgtttcctgggataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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