KEGG T01009: 100037999

Sus scrofa (pig): 100037999

Entry

100037999 CDS T01009

Gene name

TPM1

Definition

tropomyosin 1 (alpha)

Orthology

K10373

tropomyosin 1

Organism

ssc Sus scrofa (pig)

Pathway

ssc04260	Cardiac muscle contraction
ssc05410	Hypertrophic cardiomyopathy (HCM)
ssc05414	Dilated cardiomyopathy

Class

Organismal Systems; Circulatory system; Cardiac muscle contraction [PATH:ssc04260]
Human Diseases; Cardiovascular diseases; Hypertrophic cardiomyopathy (HCM) [PATH:ssc05410]
Human Diseases; Cardiovascular diseases; Dilated cardiomyopathy (DCM) [PATH:ssc05414]

SSDB

Motif

Pfam:

Tropomyosin Tropomyosin_1 Laminin_II IncA TMF_DNA_bd MscS_porin CENP-F_leu_zip AAA_13 Myosin_tail_1 DUF869 Laminin_I ERM

Other DBs

NCBI-GI:

NCBI-GeneID:

Ensembl:

UniProt:

Structure

PDB:

1C1G

Position

AA seq 284 aa
MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDELDKY
SEAPKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA
DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE
ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE
FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI

NT seq 855 nt +upstreamnt +downstreamnt
atggacgccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggat
cgagcggagcaggcggaggccgataagaaggcggcagaggacaggagcaagcggctggaa
gatgagctggtgtcgctgcaaaagaagctcaaggccaccgaagatgaactggacaaatat
tccgaggctcccaaagatgcccaggagaagctggagctggcggagaaaaaggccaccgat
gctgaagccgatgtagcttctctgaacagacgcatccaactggttgaggaagagctggac
cgtgcccaggagcgactggcaacagctttacagaaacttgaggaggctgagaaggcagca
gatgagagtgagagaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaa
atggaaattcaggagatccagctgaaagaagccaagcacattgctgaggatgccgaccgc
aagtatgaagaggtggcccgtaagctggtcatcattgagagtgacctggaacgtgccgag
gagcgggctgaactctcagaaggcaaatgtgccgagcttgaagaagagttgaaaactgtg
acgaacaacttgaagtcactggaggctcaggctgagaagtactcacagaaggaagacaaa
tatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaaactcgggccgag
tttgcagagaggtcagtaactaaattggagaaaagcattgatgacttagaagacgagctg
tacgctcagaaactgaagtacaaagccatcagcgaggagctggaccacgctctcaacgat
atgacttccatataa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (3)   
   UniGene (1)   
   ENSEMBL-SSC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
3D Structure (1)   
   PDB (1)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

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