KEGG   Sus scrofa (pig): 100515840
Entry
100515840         CDS       T01009                                 
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X5
  KO
K13126  polyadenylate-binding protein
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03015  mRNA surveillance pathway
ssc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100515840 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100515840 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100515840 (PABPC4)
   03041 Spliceosome [BR:ssc03041]
    100515840 (PABPC4)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100515840 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     100515840 (PABPC4)
Spliceosome [BR:ssc03041]
 Complex C
  Other components
   Complex C specific factors
    100515840 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 ApbA_C
Other DBs
NCBI-GeneID: 100515840
NCBI-ProteinID: XP_003127861
Ensembl: ENSSSCG00000003660
UniProt: A0A4X1VV02
Position
6:complement(95382295..95399452)
AA seq 644 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSPHPAIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgaggaaatctggcgtgggaaat
gtcttcatcaagaacctggacaaatcaatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggtagattcaagtctcgaaaagagcgagaa
gctgagcttggagccaaagccaaggaattcaccaatgtttatatcaaaaactttggagaa
gaggtggatgatgagaatctgaaagagctcttcagccagtttggtaagaccttaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcagtgggaaggtc
atttttgtcggccgtgcacagaagaaagtggaacggcaggctgagttaaagcggaaattt
gaacagctgaaacaggagagaattagtcgctatcagggggtgaatctctacattaagaac
ttggatgacaccattgatgatgagaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtgatgctggaggatgggagaagcaaagggtttggctttgtttgcttc
tcatcccctgaagaggcaaccaaagcagtcactgagatgaatggacgcatcgtgggctcc
aagccgctctatgttgccctggcccagagaaaggaagagagaaaggctcacctgaccaac
cagtacatgcagcgggtggccgggatgagagcgctccccgccaatgccatcctaaatcag
ttccagcctgcggcagggggctactttgtgccagcagttccacaggctcagggaagacct
ccatattacacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggtgttccc
acagctgtgcagaacttagcgcctcgtgctgctgttgctaccgctgctcctcgggctgtt
gcaccttacaaatacgcgtccagtgtccgcagccctcaccctgccatccagcctctgcag
gcaccccagcctgcagtccatgtgcaggggcaggagccactgaccgcatccatgctggcc
gcagcacccccccaggaacagaagcagatgctgggtgaacgtttgttcccactcatccag
accatgcactcaaacctggctgggaagattacggggatgctgctggagattgacaactca
gagctgctgcacatgctggagtcccccgagtctctccgctccaaggtggatgaagctgta
gcggtcctacaggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgct
gctgctacctcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (12)   
   UniProt (1)   
   RefSeq(pep) (11)   
DNA sequence (22)   
   RefSeq(nuc) (12)   
   GenBank (5)   
   EMBL (5)   
Protein domain (7)   
   Pfam (7)   
All databases (94)   

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