KEGG   Sus scrofa (pig): 100516948
Entry
100516948         CDS       T01009                                 
Symbol
BRCC3
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03440  Homologous recombination
ssc04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    100516948 (BRCC3)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    100516948 (BRCC3)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ssc01002]
    100516948 (BRCC3)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssc04121]
    100516948 (BRCC3)
   03036 Chromosome and associated proteins [BR:ssc03036]
    100516948 (BRCC3)
   03400 DNA repair and recombination proteins [BR:ssc03400]
    100516948 (BRCC3)
Peptidases and inhibitors [BR:ssc01002]
 Metallo peptidases
  Family M67
   100516948 (BRCC3)
Ubiquitin system [BR:ssc04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    100516948 (BRCC3)
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    100516948 (BRCC3)
   BRISC complex
    100516948 (BRCC3)
Chromosome and associated proteins [BR:ssc03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     100516948 (BRCC3)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     100516948 (BRCC3)
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172 TEDC1
Other DBs
NCBI-GeneID: 100516948
NCBI-ProteinID: NP_001229952
Ensembl: ENSSSCG00000012813
Vega: OTTSUSG00000004955
UniProt: A0A4X1T8A2 A0A480V5W3
Position
X:125383392..125439082
AA seq 291 aa
MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDPRSDPKFTYTGTEMR
TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
SSEYERIEIPIHVVPHVAVGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNG
SVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSSLE
NT seq 876 nt   +upstreamnt  +downstreamnt
atggcggtgcaggtggtgcaggcggtgcaagcggttcatctggagtcggatgctttcctc
gtctgtctcaaccacgctctgagcaccgagaaggaggaggtgatgggcctgtgcataggc
gagttgaatgatgacccaaggagtgaccccaaatttacatatactggaactgaaatgcgc
acagttgctgaaaaggtcgacgccgtgcgaattgttcacattcattctgtcatcatcttg
cgacgttccgataagaggaaggatcgagtggaaatttctcccgagcagctgtctgcggcc
tccacagaggcagagagattggctgaactcacaggtcgcccgatgagagtcgtgggctgg
tatcactcccacccccacataactgtttggccttcacacgttgatgttcgcacacaagcc
atgtaccagatgatggatcaaggctttgtaggacttatattttcctgtttcatagaagat
aaaaacacaaagactggccgggtactctacacttgctttcaatccatacaggcccaaaag
agctcagagtatgagagaattgaaatcccgatccatgttgtgcctcacgtagccgttggg
aaggtgtgcctcgagtcagcggttgagctgcccaagatcctctgccaggaggagcaggac
gcctataggaggatccacagccttacacatctggactcagtgaccaagatccataatggc
tcagtgtttaccaagaatctgtgcagtcagatgtccgcagtgagcgggcctctgcttcag
tggctggaggacagactggagcagaaccagcagcatctgcaggagctgcaacaagaaaag
gaagagctgatgcaggaactttcttctctggaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (16)   
   RefSeq(nuc) (4)   
   GenBank (6)   
   EMBL (6)   
Protein domain (5)   
   Pfam (5)   
All databases (43)   

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