KEGG   Sus scrofa (pig): 100517118
Entry
100517118         CDS       T01009                                 
Symbol
DHX8
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100517118 (DHX8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ssc03041]
    100517118 (DHX8)
Spliceosome [BR:ssc03041]
 Complex C
  Other components
   Step II factors
    100517118 (DHX8)
SSDB
Motif
Pfam: OB_NTP_bind HA2_C S1 Helicase_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 Flavi_DEAD AAA_16 T2SSE TsaE PhoH Sigma54_activ_2 ABC_tran
Other DBs
NCBI-GeneID: 100517118
NCBI-ProteinID: XP_003131427
Ensembl: ENSSSCG00000017378
UniProt: A0A480JVQ7 A0A4X1TNW0
Position
12:complement(19549280..19582090)
AA seq 1212 aa
MAVAVAVAGAVTGMELGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKASLVKNGAEFTDSLISNLLRLIQTMRPPAKPSTSKDPVVKPKTEKEKLKELFP
VLCQPDNPSVRTMLDEDDVKVAVDVLKELEALMPSAAGQERHRDTEHRDKTKKKKRSRER
DRDRDRERDRDHKRRHRSRSRSRTRERNKGKSRYRSRSRSQSPPRDRKDRDKYGERNLDR
WRDKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVAN
VADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLNPNRRRNLVGETNEETSMRNPD
RPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPK
VDDEEDEDLEIELVEEXPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRE
LKQAQREAEMDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPNDIPEWKKHAFGGNKA
SYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYT
SRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLR
ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY
FYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDT
ACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTI
DGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAY
RDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALD
DEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALA
DQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDR
HKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEW
VVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEP
NAWRISRAFRRR
NT seq 3639 nt   +upstreamnt  +downstreamnt
atggcggtggctgtggctgtggcgggagcagtaaccgggatggagctgggccccgcggaa
gagctcgccaaactcgaatatctgtctttggtgtcgaaggtttgcaccgagctggacaat
cacttggggatcaacgacaaggatctggctgagtttgtgatcagtcttgctgagaaaaat
accacctttgatacttttaaggcttctctggtcaaaaatggtgcagaattcacggattct
ctcattagtaacttgctgcgtctcatacaaaccatgcggcctccagcaaagccttccact
agcaaagatccagttgttaaacccaaaactgaaaaagaaaagctgaaggaactcttccca
gtcctttgccaaccagacaacccttctgtgcggaccatgctggacgaggatgatgtgaaa
gttgccgtggatgtcctcaaagagctggaggccttgatgccaagtgcagcaggccaggag
cggcacagagacaccgagcaccgggacaagacgaagaagaagaagcggagtcgagagcga
gaccgcgaccgcgatcgtgagcgcgatagagaccacaagcggagacaccggtcccgctca
cgttcccggacccgggagaggaataaggggaagtctaggtatcggtccaggagcagaagt
cagagtccccccagagaccggaaggaccgagacaagtacggggagaggaatctggacaga
tggcgggataagcatgtggaccgccctccccccgaagagcccgccatcggggacatttac
aacggcaaggtcaccagcatcatgcagtttggatgctttgtgcagctggagggactaagg
aagcggtgggaaggcctggtgcacatttctgagctccggcgggaaggccgtgtggccaac
gtggctgatgtggtgagcaaaggccagagggtcaaggtcaaagtgctgtccttcaccggg
accaagaccagcttgagtatgaaggacgtggatcaggagactggcgaggatctaaaccca
aatcgacgccggaatctggttggggagaccaatgaggagacgtctatgaggaatccggac
agacccacccacctctccctcgtcagcgcccccgaagtagaagatgactcgctggagcgc
aagcgccttacccgcatctctgacccagagaagtgggagatcaagcagatgattgctgcc
aatgtcctttctaaagaagagtttccagactttgatgaagagactggcattctgcctaaa
gtggatgatgaagaagatgaggaccttgagatcgaactggtggaggaatagcctcccttc
ctgagagggcacaccaagcagagcatggacatgagccccatcaaaatcgttaagaacccg
gatggctccctatcccaggcagcgatgatgcagagtgccttagccaaagaaaggcgggaa
ctcaagcaggcccagcgggaagccgagatggattctattcccatgggactcaacaaacat
tgggttgatcctctgcctgatgcggaaggcaggcagattgctgctaacatgcggggcatc
ggcatgatgcccaatgacattcctgagtggaagaagcatgcttttgggggcaacaaagct
tcttatggaaaaaagacccagatgtcaatcatcgagcagagagagagcctacccatctac
aaactgaaggagcagcttgtccaggctgttcacgataaccagatcctgattgttattgga
gaaacaggatctgggaagacaacgcagatcacccagtacctggcggaggcgggctacacc
tccaggggcaagattggatgtacccagcccagaagggtagcagccatgtcagtggccaaa
agagtgtcggaggagtttggttgttgcttaggccaggaggtgggctacaccattcgattt
gaggactgcaccagccccgaaacagtcatcaagtacatgaccgacgggatgctgctccga
gagtgcctgattgaccccgacctcacccagtatgcgatcatcatgttggacgaggcccac
gagagaacaattcacactgacgtgctctttgggttgttgaaaaagacggttcagaaacgg
caggacatgaagctgatcgtcacctcagccaccttggatgcagtgaagttttcccagtac
ttctatgaagcgcccatcttcaccatcccaggtcgaacataccctgtggaaatcttgtac
acaaaggagcccgagacagattatctggatgccagcttgatcactgtcatgcagatccat
ttaacggagccaccaggtgatatcctggtcttcctgacgggtcaggaagagatcgatacc
gcctgcgagatcctgtatgaacgaatgaaatccctgggacccgacgttccggagttgatc
atcctcccggtgtactccgctcttcccagtgagatgcagacccgaatctttgacccagcg
ccacctggcagcagaaaggttgtgattgccaccaacattgcagagacgtcactgactatc
gatggcatttactatgtggtggaccctggattcgtgaagcagaaggtctacaattccaag
acagggatcgaccagctcgtggtgactcctatttctcaggctcaggcaaaacagcgagct
ggcagagctgggagaacaggcccagggaagtgttataggctgtacacagaacgtgcctac
cgagacgaaatgctgaccaccaatgtgccggaaatccagagaaccaacctggcaagcaca
gtgctctcgctcaaggccatgggcatcaatgacctgctgtcctttgacttcatggatgcc
cccccgatggaaaccttgatcacagccatggagcagctgtacacgctgggggccctggac
gacgagggcctacttactcgactgggccgcaggatggcggagttccctctggagccaatg
ctgtgcaaaatgctgatcatgtctgtgcatctcggctgcagtgaggaaatgctgaccatt
gtgtccatgctgtctgtgcagaacgtcttctacaggcccaaggataaacaagcccttgca
gatcagaagaaggcgaaattccaccagactgaaggggaccacctcaccctgctggctgtg
tacaactcctggaagaataacaagttctccaacccctggtgctacgagaacttcatccag
gcgcgttctctgcgccgggcccaggacattcgcaagcagatgttaggcataatggacaga
cacaagctggacgtggtctcctgtggtaagtccaccgtccgagtgcagaaggccatctgc
agtgggttcttccggaacgctgccaagaaagacccacaggaaggttaccggaccctgatt
gaccagcaggtggtctacatccatccttccagcgctctcttcaacaggcagcccgaatgg
gtggtctaccacgagctggtgctgaccacaaaggagtacatgcgcgaggtcaccaccatc
gacccccggtggctcgtggagtttgcaccggccttcttcaaggtctccgacccgaccaag
ctcagcaagcagaagaagcagcagcgtcttgaacccttgtacaaccgctatgaggaaccc
aatgcctggagaatatcccgagccttccggcggcgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (16)   
   Pfam (16)   
All databases (59)   

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