KEGG   Sus scrofa (pig): 100519357
Entry
100519357         CDS       T01009                                 
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ssc03041]
    100519357 (YTHDC2)
Spliceosome [BR:ssc03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    100519357 (YTHDC2)
SSDB
Motif
Pfam: YTH OB_NTP_bind HA2_C Helicase_C R3H DEAD HA2_N Ank_2 AAA_19 nSTAND3 AAA_22 Ank ATPase PhoH UvrD-helicase AAA_7 AAA_16 AAA_29 Ank_4 T2SSE SRP54 AAA_23
Other DBs
NCBI-GeneID: 100519357
NCBI-ProteinID: XP_020940286
Ensembl: ENSSSCG00000014211
Position
2:118003402..118092176
AA seq 1431 aa
MSRPSSVSPRPPAPGGGGGGGPAPCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGE
QREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLT
HNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVK
RGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP
CRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTL
MAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYF
GSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQSTLTEWYSAQEN
TFKPESQRQRAVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHK
DVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHSKASNG
WMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFD
DEKVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNTHSRYQVF
MLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNF
VTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLH
TKLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEP
HLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMA
LLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIR
DVNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPP
ANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSS
FRADGIPNDSSDSEMEDRTTANLATLKLDEWLSFKLEPEAASLLLQLRQKWHSLFLRRMR
APSKPWSQVDEATIRAIIAVLSTEEQAAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSR
KSSADTEFSDESTTAERVLMKSPSPALHPPQKYKDRGILHPKRSADDRSDQSSVKSTDSS
SYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERK
LNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESL
PFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTATD
NT seq 4296 nt   +upstreamnt  +downstreamnt
atgtccaggccgagcagcgtctccccgcggccgccggctcccggcgggggcggcggaggt
ggccccgcgccgtgtggtcctgggggtggtggcagggccaaggggctgaaggatattcgt
atagacgaagaagtgaagatcgcggtcaacatcgctctggagcgcttccgatatggagag
cagagagaaatggaatttccttcttctttgaccagtacagaaagagcctttattcatcga
ttgagtcagtctcttggtttggtttctaaaagtaaaggaaagggagcaaatagataccta
actgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgact
cataatacaaaacatgctgttaggagcctaattcaaagatttcctgtcaccaataaagag
cgtactgaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaac
cgggaaatgagcaagacaagtgggcgactcaacaatggcatacctcagattccagtgaaa
agaggagaatctgaatttgattctttcaggcagtctctgccagtgtttgagaaacaagaa
gaaattgtcaaaatcattaaggaaaataaagtagttttgattgtaggagaaactgggtct
ggaaagactacacagattcctcagttccttttagatgattgtttcaaaaatggtatcccc
tgccgtatattttgcactcaaccaagacgattagcagctatcgctgtggctgaaagagtt
gctgcagagagaagagaaaggattggtcaaacaattggatatcagatccgtttagaaagc
agggtttctccaaagacacttctgacattttgtactaacggtgtattgcttcgtactctg
atggcaggagatagtactttgtcaactgtgacacatgttattgtggatgaagtacatgaa
agggatcgatttagtgattttttacttacaaagttaagagatttgttgcaaaagcaccca
actttgaaactaattctttctagtgcagccttggatgtaaatctttttataagatacttt
gggagttgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttctg
gaagatattttaagaactactggatacacaaacaaagaaatgttgaagtacaaaaaggaa
aagcagcgagaagaaaaacaacaaagcacgcttacagaatggtactcagcgcaagagaat
actttcaaacctgaatctcagagacaaagagctgttccaaatgtgactgaagagtatgat
ttattggatgatgggggtgatgctgtcttcagtcagttgacagaaaaagatgtgaattgc
cttgaaccatggttaataaaggaaatggatgcttgtctttctgacatatggctgcataaa
gatgttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgttgat
tacagacatagtgaaaccagcgcaacagctctgatggtagctgcaggaagaggtttttca
agtcaagtagaacagttaattagtatgggagccaatgtccatagtaaagcatcaaatggc
tggatggctttagattgggctaaacactttgggcagactgaaattgtggatcttctagag
tcttacagtgcttcattggaatttggaaatctggatgaaagttctctagttcagacaaat
ggaagtgacctcagtgcagaagacagagagctcctgaaagcttatcatcatagttttgat
gatgaaaaagtagacttggatttgatcatgcatcttctttacaatatctgccatagttgt
gatgctggtgcagtattgattttcctacctggatatgatgaaattgttggtctgagggat
cgcatcctctttgatgacaagcggtttgctgacaatacacacagcagatatcaagtcttt
atgcttcattcaaatatgcaaacatctgatcaaaagaaggtattaaaaaacccaccagca
ggtgttcgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaatgat
gttgtctttgttattgattctggtaaggtgaaagagaaatcctttgatgcactgaatttt
gttacaatgttaaaaatggtgtggatttccaaagcaagtgctatacagcgaaaaggcagg
gcagggcgatgcagacctggaatttgtttccggctattcagtagacttcgattccagaat
atgttggaatttcagacgccagaacttttgagaatgccattacaggaactttgtttacat
accaagctgttagccccagttaattgtcctattgctgatttccttatgaaagctcctgaa
cctccaccagctttaattgtaagaaatgctgtacagatgcttaagacaatagatgcaatg
gatgcatgggaagatctcactgaacttggttatcatttggctgacttgccggtagaacct
catcttggtaaaatggtcctgtgtgcagttgttttaaagtgtctggaccccatccttaca
attgcctgtacactagcctatagagatccttttgtcctgccgacacaggcctctcaaaaa
cgcgcagctatgctttgtaggaaacgtttcactgcaggaactttcagtgaccatatggca
cttctcagagcattccaggcatggcagaaagctcgaagtgatggatgggagcgagccttt
tgtgaaaagaattttctttcacaagctacgatggaaataatcataggcatgagaactcag
ttgcttggtcaacttagagcatcaggttttgttagagcacgaggtggtggtgatatccga
gatgttaacacaaattctgagaactgggctgttgtcaaagctgcattggttgcaggcatg
tatcctaatttagtccatgtggacagagagaatgtagtattgacagggccaaaggagaaa
aaagtacggtttcatcccacttcagttctcagtcagcctcaatataaaaagattcctcca
gccaatggtcaagctgcagcaattcaggcactgcccacagattggcttatttatgatgaa
atgaccagagctcatagaatagctaatattagatgttgttcagcagtgactcctgtcact
gtcttggtattctgtggaccagctaggctggcaagtaatgctcttcaggaaccttcatct
tttcgagcagatgggattcctaatgacagtagtgatagtgaaatggaagacagaactact
gctaatttggcaactttaaaacttgatgagtggctcagtttcaaactagagccagaggca
gccagtttattgctgcagctaagacagaagtggcacagcttatttttacgtcgaatgaga
gctccatccaaaccttggtctcaagttgatgaagctaccataagagcaattatagctgtt
ttaagcactgaagaacaggctgcaggtttacagcaaccatctgggattggccaaaggcca
aggcctatgtcttcagaagaacttcctttggcatcatcttggagatctaataatagcagg
aaaagttcagcagatactgaattttctgatgagtctactactgcagaaagagtattgatg
aaatctccatctccagcactacacccacctcaaaagtacaaagacagaggaattttacat
cctaaacgaagcgctgatgaccggtctgaccaatcttctgtgaaatctacagacagtagt
agttatccaagtccttgtgctagtccttctcccccatcctcaggaaagggctcaaaatct
ccttcaccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatttgaga
aacctcgaaatttctcaacagaagggtatctggtctaccacccctagtaacgaacggaag
ctaaatcgagccttttgggaaagcagcatggtttacttggtattttctgttcagggatct
gggcatttccagggattttctagaatgtcttctgaaataggaagggagaagagtcaggac
tggggctcagctggactaggaggagtgtttaaggtggaatggatacgaaaagaaagtctt
ccctttcagtttgcacaccacttactcaatccttggaatgacaacaagaaagtccagata
agcagagatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaa
cgccttccattgggagaaaaaactgcaactgattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (22)   
   Pfam (22)   
All databases (44)   

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