KEGG   Sus scrofa (pig): 100522239
Entry
100522239         CDS       T01009                                 
Symbol
DDB1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03420  Nucleotide excision repair
ssc04120  Ubiquitin mediated proteolysis
ssc05161  Hepatitis B
ssc05170  Human immunodeficiency virus 1 infection
ssc05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100522239 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100522239 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100522239 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    100522239 (DDB1)
   05161 Hepatitis B
    100522239 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssc04121]
    100522239 (DDB1)
   03400 DNA repair and recombination proteins [BR:ssc03400]
    100522239 (DDB1)
Ubiquitin system [BR:ssc04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     100522239 (DDB1)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      100522239 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      100522239 (DDB1)
SSDB
Motif
Pfam: MMS1_N CPSF_A Beta_propel
Other DBs
NCBI-GeneID: 100522239
NCBI-ProteinID: XP_003122699
Ensembl: ENSSSCG00000013094
UniProt: A0A4X1VLC3
Position
2:10171554..10201602
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSNQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARISKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMXLYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcacagaagcccaccgccgtgaacggctgcgtgacc
ggacactttacttcagctgaagacttgaacctgttgattgccaaaaacacaaggttagag
atctatgtggtgaccgctgaggggcttcggcccgtcaaagaggtgggcatgtatgggaag
attgccgtcatggagctcttcaggcccaagggggagagcaaggacctactgttcatcctg
acagccaagtacaatgcctgcatcttggagtataagcagagcggcgagagcattgacatc
ataactcgagcccatggcaacgtccaggaccgtattggccgcccctcagagacgggcatt
attggcatcatcgaccctgagtgccggatgattggcctgcgactctatgatggccttttc
aaggttattccactagaccgagacaataaagagctcaaggcctttaacatccgcctggag
gagctgcatgttatcgacgtcaagttcctgtatggttgccaagcgcctaccatctgcttt
gtctaccaggaccctcaggggcggcacgtaaaaacctatgaggtctctctccgggagaag
gagttcaataagggcccctggaaacaggagaacgtagaagctgaagcttccatggtgatt
gcagtgccagagcccttcggcggtgccatcatcatcggacaggaatcaatcacctatcac
aacggtgacaaatacctggcgattgcccctcccatcattaagcaaagcacaattgtgtgt
cacaatcgcgtggaccccaatggttcccgctacctgctgggagacatggaaggacggctc
ttcatgttgcttttggagaaggaggagcagatggacggcaccgtcaccctcaaggatctg
cgtgtggaactccttggggagacctctatcgccgagtgcttgacctacctcgataacggc
gttgtgtttgtcgggtctcgccttggtgactcccagcttgtgaagctcaatgttgacagc
aatgagcagggctcctatgtcgtggccatggaaacctttaccaatttgggacccattgtg
gacatgtgcgtggtggacctggaaaggcaggggcagggacagctggtcacttgctctggg
gctttcaaggaaggttccttgcggatcatccggaatggaattggaatccacgagcatgct
agcattgacttaccaggcatcaaaggcctgtggccacttcggtctgatcctaaccgggag
acggatgacactctggtgctctcttttgtgggccagacaagagttctcatgctaaacgga
gaggaagtggaagaaacagaactcatgggtttcgtggacgatcagcagactttcttctgt
ggcaacgtggctcatcagcagcttatccagatcacttcagcatctgtgaggttggtctct
caagaacccaaagctctggtcagtgaatggaaggagcctcagggcaagaatatcagtgtg
gcctcctgcaacagcaaccaggtggtggtggccgtggggagggccctctactacctgcag
atccatcctcaggagctccgacagatcagccacacagagatggagcatgaagtggcctgc
ttggacatcaccccactgggggacagcaatgggctgtccccgctttgtgccattggcctc
tggacagacatctcggcccgtatctcgaagctgccctcatttgagctgctgcacaaagag
atgctgggtggagagatcattcctcgttccatcctgatgaccacctttgagagtagccac
tacctcctttgtgccttgggagatggagcgctcttctactttgggctcaacattgagaca
ggcctgttgagcgaccgtaagaaggtgacgctgggcacccagcccacggtgttgaggacg
ttccggtctctctctaccaccaacgtcttcgcttgctctgaccgccccactgtcatctac
agcagcaaccacaaactggtcttctccaacgtcaacctcaaggaagtgaactacatgtgt
cccctcaactcagatggctatcctgatagcctggcactggccaacaatagcaccctcacc
atcggcaccatcgatgagatccagaagctgcacatccgcacggttcccctctatgaatct
cccaggaagatctgctatcaggaggtgtcccagtgcttcggggtcctttccagccgtatc
gaagtccaggacacaagtgggggcacgactgccctgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttctccagcagcacagcccctcacgagacc
tcctttggagaagaggtggaggtgcataacctccttatcattgaccagcacacctttgaa
gttcttcatgcccaccagtttctacagaacgagtatgccctcagcctggtctcctgcaag
ctgggcaaagaccccaacacgtacttcatcgtgggcacggccatggtgtatcccgaagag
gcggagcccaagcagggtcggattgtggtctttcagtattcagatggaaaactacagacg
gtggctgaaaaggaggtgaaaggggccgtgtactcgatggtggaatttaacgggaagctc
ttagccagcatcaacagcacggtgcggctctacgagtggacgacggagaaggagctccgc
accgagtgcaatcactacaacaacatcatgngcctctacctgaagaccaagggcgacttc
atcctggtgggcgacctcatgcgctccgtgctgctgctggcctacaagcccatggagggc
aacttcgaagagattgctcgagactttaaccccaactggatgagtgctgtggagatcttg
gatgatgacaatttcctgggggccgaaaatgcctttaacttgttcgtgtgtcagaaggat
agcgccgccaccaccgacgaggagcggcagcacctccaggaggtggggctcttccacctg
ggtgaattcgtcaacgtcttttgccatggctcgctggtcatgcagaatctgggcgagacc
tccacccccacacagggctcggtgctcttcggcacggtcaacggcatgattggcctggtg
acgtcactctcagagagctggtacaacctcttgttggacatgcagaatcgactcaataaa
gtcatcaaaagcgtgggcaagattgagcactccttctggagatcctttcatacggaacga
aagactgaaccggccacaggcttcattgatggagacttgattgagagtttcctggatatc
agccgacccaagatgcaggaggttgtggccaacctacagtacgacgatggcagcggaatg
aagcgagaggccaccgcagatgacctgatcaaggtcgtggaggagttgactcggatccat
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

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