KEGG   Sus scrofa (pig): 100739577
Entry
100739577         CDS       T01009                                 
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100739577 (SNRNP200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ssc03041]
    100739577 (SNRNP200)
Enzymes [BR:ssc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100739577 (SNRNP200)
Spliceosome [BR:ssc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100739577 (SNRNP200)
 Complex C
   U5 SnRNP specific factors
    100739577 (SNRNP200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 DUF603
Other DBs
NCBI-GeneID: 100739577
NCBI-ProteinID: XP_020942757
Ensembl: ENSSSCG00000008127 ENSSSCG00000008129
Position
3:46929066..46960420
AA seq 2136 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFSSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLGDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq 6411 nt   +upstreamnt  +downstreamnt
atggcggatgtgaccgcccgtagcctgcagtacgagtacaaggcgaactcgaatcttgtc
ctccaagctgaccgctctctcattgaccggacccgccgggatgaacccacaggagaggtg
ctctccctggttgggaagttggaaggtacccgtatgggagataaggctcaacggaccaaa
ccacagatgcaagaggaaagaagagccaagcgaagaaagcgtgatgaggaccgacatgac
atcaacaagatgaagggttacactctgctctcggagggtatcgatgagatggtgggcatc
atctataagcccaaaaccaaagagacccgggagacctatgaagtgctactcagcttcatc
caagctgcccttggtgaccagcctcgtgatatcctttgtggggcagctgatgaagttcta
gctgttttaaagaatgagaagcttcgggataaggagaggagaaaggagattgatctgctg
ctgggtcagacagatgatacaagataccatgtgctggtgaacttgggcaaaaagatcaca
gactatggtggagacaaggaaattcagaatatggatgacaacattgatgagacatatggt
gtgaatgtacagtttgagtctgatgaggaggaaggcgatgaagatgtgtatggagaggtt
cgagaagaggcgtctgacgatgacatggaaggggacgaggcggtggtgcgttgcaccctc
tcggcgaatctcgtggcctcaggggaactgatgagttccaagaagaaggatttgcaccct
cgggatatcgatgccttttggctacagcggcagctcagtcgcttctatgatgatgccatt
gtgtcgcagaagaaggcagatgaagtgttggaaattttgaagacggccagtgacgatcgg
gaatgtgagaaccagttggttctgctccttggcttcaacacttttgattttattaaggtc
ttgaggcagcacaggatgatgatcttatactgtaccttgctggccagtgcacagagtgag
gctgaaaaggaaaggatcatgggcaagatggaagccgacccggagctgtccaagttcctc
taccagctccatgaaacggagaaggaggacctgatccgggaggagaggtcccggagagag
cgagtacgtcagtcccggatggacacagacctggagaccatggatctggaccagggtgga
gaggccctggctccgagacaggttctggacttggaggacctagtttttacccaggggagc
cacttcatggccaacaaacgctgtcagcttcctgatgggtccttccggcgccagcgcaag
ggctacgaagaggtgcatgtgcctgctctcaagcccaagcccttcagctcagaagaacaa
ctgcttccagtggagaagctgcccaagtatgcccaggctggatttgagggcttcaaaacg
ctgaatcggatccagagtaaactctaccgtgctgctctggagacagatgagaacctgctg
ctgtgcgctccaaccggtgccggcaagaccaacgtggccctgatgtgcatgctccgagag
atagggaagcacatcaacatggacggcaccatcaatgtggacgacttcaagatcatctac
atcgctcccatgcggtctttggtgcaggagatggtgggcagtttcggaaagcgcctggcc
acctacggcatcactgttgcagaattgactggcgaccaccagctgtgcaaggaggagatc
agcgccactcagatcatcgtctgcactcctgaaaagtgggacatcatcacccgcaagggc
ggggagcgcacctacacccagctcgtgcggctcatcatcctagatgagatccatcttctc
catgatgacagaggtcccgtcttagaggccttggtggccagggccatccggaacattgag
atgacccaagaggatgtcagactcattggtcttagcgccaccctccccaactatgaagat
gtggcaacctttctgcgtgtcgatcctgccaaaggcctcttctactttgacaacagcttc
cgcccagtgcctctggaacagacttatgtaggcatcacagagaaaaaagcaatcaagcgt
ttccagatcatgaatgaaattgtctatgaaaaaattatggaacatgctgggaaaaatcag
gtgctggtgtttgtccactcccggaaggagactgggaagacggccagggccatccgggac
atgtgcctggagaaggacacgctgggtctctttctgagagagggctcagcctccacagaa
gttctgcggacggaagccgagcagtgcaagaacctggagctgaaagatcttctgccctat
ggctttgccattcatcacgcaggcatgaccagagttgaccggacccttgtagaggatctt
tttgctgataaacacattcaggttttagtttccacagcaaccctggcttggggtgtgaat
cttcctgcacatactgtcatcatcaaaggcacgcaggtgtacagtccagagaaggggcgc
tggacagagctgggggccctggacattctgcagatgctgggacgtgcgggacgacctcag
tatgataccaagggcgaaggcatcctcatcacttcacatggggagctgcaatactacctg
tccctcctcaatcagcagctgcctattgagagccagatggttgcaaagctgcctgacatg
ctcaacgcggaaatcgtgctggggaatgtccagaacgcaaaggatgcagtgaactggctg
ggctatgcctacctgtacatccgaatgcttcgatccccaaccctctatggcatttctcat
gatgacctcaagggagaccccctgctggaccagcgccgactggacctggttcatactgct
gccttgatgctggataagaacaatctggtcaagtatgacaagaagacgggcaacttccag
gtgacggaactgggccgtatagccagccactactacatcaccaatgatacagtgcagacc
tacaaccagctgctcaagcccaccctgagtgagattgagcttttcagagtcttctcattg
tcctcagagttcaagaacatcactgtgagagaggaggagaagctggagctgcagaagttg
ctggagagggtgcccatccctgtaaaggagagcatcgaggaacccagcgcaaagatcaac
gtgcttctccaagctttcatctcacagctgaagttggagggctttgctctgatggccgac
atggtgtacgttacccagtcagctggccggttgatgcgtgccatctttgaaattgtcctg
aaccgaggctgggcacagctgacagacaagaccctgaacctttgcaagatgattgacaaa
cgcatgtggcagtccatgtgtcctctgcgccagttccggaagctccctgaggaggtggtg
aagaagattgagaagaaaaacttccctttcgagcgtctgtatgacctgaatcacaacgag
ataggggagctcatccgcatgcccaagatggggaagaccatccacaaatatgtccacctg
tttcccaagctggagctgtcggtgcacctgcagccgatcacacgctccaccctgaaagtg
gagctgaccatcacacccgacttccagtgggacgaaaaggtccatggttcatcagaggcc
ttctggattctggtggaggatgtagacagcgaggtgatactgcaccatgagtatttcctc
ctcaaggccaagtatgcccaggacgagcacctcattaccttcttcgtgcctgtctttgaa
ccgctgccccctcagtacttcatccgagtggtgtctgaccgctggctctcctgtgagacc
cagctgcctgtctctttccggcacctgatcctcccggagaagtacccgcccccaaccgag
ctcctggacctgcagcccttgcctgtgtctgccctgcgaaacagtgcctttgagagcctt
taccaagataaattcccgttcttcaaccccatccagactcaggtgtttaacaccgtgtac
aatagcgatgacaacgtgtttgtgggcgcccccacgggcagcgggaagaccatctgtgca
gagttcgccatcctacggatgctactgcagaattcggaggggcgctgtgtctacatcacc
cccatggaggctctggcggagcaggtgtacatggactggtacgagaagtttcaggacagg
ctcaacaagaaggtggtgctcctcactggggagaccagcacggacctgaagctcctgggc
aaaggcaacatcatcatcagcactcctgagaagtgggacatcctttcccggcggtggaag
cagcgcaagaacgtccagaacatcaacctctttgtggtggatgaggtccacctcatcggg
ggcgagaatgggcccgtcttagaggtgatctgctctcggatgcgctacatctcctcccag
atcgaacggcccatccgcatcgtggccctgagctcctcgctatcaaatgcgaaggatgtg
gcccactggctggggtgcagcgccacctccaccttcaacttccacccgaacgtgcgcccc
gtgcccctggagctgcacatccagggcttcaacatcagccacacgcagactcgcctgctg
tccatggccaagcccgtgtaccacgccatcaccaagcactcacccaagaagcccgtcatc
gtcttcgttccatctcgcaagcagacgcgcctcaccgccatcgacatcctcaccacgtgt
gcagcggacatccagcggcagaggttcctgcactgcacagaaaaggacctgatcccatac
ctggagaagctgggcgacagcacactcaaggagacgctgctcaacggggtgggctacctg
cacgaggggctcagccccatggagcggcgcctggtggaacagctcttcagctcaggcgcc
atccaggtggtggtagcttctcgaagtctctgctggggcatgaacgtggccgcccacctg
gtcatcatcatggacacccagtactataacggcaagatccacgcgtacgtggactacccc
atctacgatgtgctccagatggtgggccgtgccaaccgccccttgcaggatgacgagggg
cgctgcgttatcatgtgccagggctccaaaaaggatttcttcaaaaagttcttatatgag
cctttgccagtagagtctcacctggaccactgtatgcatgaccacttcaatgcagagatt
gtcaccaagaccatcgagaacaagcaggacgccgtggactacctcacctggacctttctg
taccgccgcatgacacagaaccccaactattacaacctgcagggcatctcccatcgtcac
ctgtctgaccacttgtcagagcttgtggaacagaccctgagtgacctggagcagtccaag
tgcatcagtattgaggacgagatggacgtggcgcctctgaacctgggcatgattgctgcc
tactattacatcaactataccaccattgagctcttcagcatgtccctgaacgccaagacc
aaggtgcgagggcttattgagatcatctccaatgcggctgagtatgagaacattcccatc
cgacaccatgaagacaacctgcttcggcagttggctcagaaggtcccccacaagctgaat
aaccccaagttcaacgacccacacgtgaagaccaacctgcttctgcaggctcacctgtcc
cgcatgcagctgagtgctgagctgcagtcggatacagaggaaatccttagcaaggccatc
cggctcatccaggcctgtgtggatgtcctctccagcaacggctggctcagcccagccctg
gcagccatggagctggcccagatggtcacgcaggccatgtggtccaaggactcatacctg
aaacagctgccacacttcacctcagagcacatcaaacgctgcacagacaagggggtggag
agtgtcttcgacatcatggagatggaagatgaggagcgcaacgcgttgctgcaactgtca
gacagccagattgcagacgtggcccggttctgtaaccgctaccccaacatcgagctgtcc
tacgaagtggtggataaggacagtatccgcagtggtgggccagttgtggtgctggtgcag
ctggagcgagaggaagaagtcacaggccctgtgatcgcacctctcttcccacagaaacgt
gaagagggctggtgggtggtgattggagatgccaagtcaaacagcctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagcttgacttcgtggccccggccactggt
gcccacaactacactctgtacttcatgagtgacgcctacatggggtgtgaccaggagtac
aaattcagtgtggatgtgaaagaagctgagacagacagtgactcagattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (2)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (14)   
   RefSeq(nuc) (2)   
   GenBank (6)   
   EMBL (6)   
Protein domain (11)   
   Pfam (11)   
All databases (63)   

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