KEGG   Sus scrofa (pig): 106506270
Entry
106506270         CDS       T01009                                 
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
  KO
K04833  voltage-gated sodium channel type I alpha
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04728  Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09150 Organismal Systems
  09156 Nervous system
   04728 Dopaminergic synapse
    106506270 (SCN1A)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:ssc04040]
    106506270 (SCN1A)
Ion channels [BR:ssc04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   106506270 (SCN1A)
SSDB
Motif
Pfam: Ion_trans Na_trans_cytopl Na_trans_assoc PKD_channel GPHH ATP-synt_B IQ FUT8_N_cat
Other DBs
NCBI-GeneID: 106506270
NCBI-ProteinID: XP_020931828
Ensembl: ENSSSCG00000015910
Position
15:complement(72529866..72696715)
AA seq 2009 aa
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDEHGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNVTRDY
NGTLVNETSTEFDWKSYIQDSRYHYFLEGFPDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAVTASEHSREPSAAGGLS
DSSSETSKLSSKSAKERRNRRKKRKQKEQSGGEEKDDDDFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETDMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTDHFNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKINSECKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGIAYVKRKIYEFIQQSFVRKQKILDEIKPLDDLNNRKDCCMSNHTGETGKDLDYLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVVEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDMFDISEVNNHSDCLILIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSDYVTNILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKIKGGANLLVKEDMIIDRINENSMTEKTDLTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq 6030 nt   +upstreamnt  +downstreamnt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcggccattgaaagacgcattgcagaagaaaaggctaagaatcccaaaccagac
aagaaagatgacgatgaacatggcccaaagccaaatagtgacttggaagctggaaagaac
cttccttttatttatggagacatccctccagagatggtgtcagagccgctggaggacctg
gacccctactatatcaataagaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctctgccctgtacattttaactcccttcaaccctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcaccattttgacg
aactgtgtgtttatgacgatgagtaaccctcctgactggacaaagaatgtagagtacacc
ttcacaggaatatatacttttgaatcacttataaaaattattgcaagaggcttctgtttg
gaagattttactttccttcgggacccatggaactggcttgacttcactgtcattacattt
gcatacgtgacagagtttgtggacctgggcaatgtctctgcgttgagaacattcagagtt
ctccgagcactgaaaaccatttcagtcattccaggcttgaaaaccatcgtgggagccctg
atccagtctgtgaagaagctctctgatgtcatgatcctgactgtgttctgtctgagcgtg
tttgcactgattgggctgcagctctttatgggcaacctgcggaataaatgcgtgcaatgg
cctcccaccaatgcttccctggaggaacacagtatagaaaagaatgtaactagggattac
aatggcacccttgtaaatgaaacttccactgagtttgactggaaatcgtatattcaagat
tcaagatatcattattttctggagggttttccagatgcactactgtgtggaaatagctca
gatgcaggccaatgtccagaaggatacatgtgtgtgaaagctggcagaaatcccaattat
ggctacacaagctttgataccttcagttgggcttttttgtccctgtttcgactgatgact
caagacttctgggaaaatctttaccaactgacattacgtgctgctggaaaaacatacatg
atattttttgtgctggtcattttcttgggctcattctatctaataaatttgatcctggct
gtggtggccatggcctatgaggaacagaatcaggccaccttggaagaggctgaacagaaa
gaggctgaatttcagcagatgcttgaacagcttaaaaagcaacaggaggcagctcagcag
gcagcagctgtaactgcctcagagcattccagagaacctagtgcagcgggtgggctctca
gacagctcatctgaaacctccaagttgagttccaagagtgccaaggaaagaagaaatcgg
agaaagaaaagaaaacagaaagagcaatctggtggagaagagaaagatgatgatgatttc
cataaatctgaatctgaagacagcatcaggaggaaagggtttcgcttctccatcgaaggg
aatcggttgacatatgaaaagaggtactcctccccacaccagtctctgttgagcatccgt
ggctccttattttctccaaggcgaaatagcagaacaagccttttcagcttcagagggcga
gcaaaggatgtgggatcagagaatgactttgctgatgatgagcacagcacctttgaggat
aacgagagccgcagagactccctatttgtgccccgacggcatggagagcgacgcaacagt
aacctaagtcagaccagcaggtcgtcccggatgttagccgtgtttcctgccaatgggaag
atgcacagcaccgtggattgcaatggtgtggtttccttggttggtggaccttcggttcct
acatcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaaccactgaaactgatatgagaaagagaaggtcaagttctttccatgtttcc
atggactttctagaagatccttctcaaaggcaaagagcaatgagtatagccagcatttta
acaaatacagtggaagaactggaagaatccaggcagaaatgcccaccctgttggtataaa
ttttccaacatattcttaatctgggactgttcgccatattggttaaaagtgaaacatatt
gtcaacctggttgtgatggacccatttgttgacttggccatcaccatctgtattgtctta
aatactcttttcatggccatggagcactatcccatgacggaccacttcaataatgtgctt
acagtaggaaacttggttttcactgggatctttacagcagaaatgtttctgaaaattatt
gccatggatccttattattatttccaagaaggctggaatatctttgatggttttattgta
acgcttagcctggtagaacttggcctggccaacgtggaaggattatcagttctccgttca
tttcgattgctccgagttttcaagttggcaaaatcttggccaacattaaatatgctaata
aagatcatcggcaattcagttggggctctgggaaatctaaccttggtgttggccatcatc
gtcttcatttttgctgtggtcggcatgcagctctttggtaaaagctacaaagactgtgtt
tgcaagatcaacagtgagtgtaagctcccacgctggcacatgaatgacttcttccactcc
ttcctgattgtgttccgggtgctgtgtggagagtggatagagaccatgtgggactgcatg
gaggtcgccggtcaggccatgtgccttactgtcttcatgatggtcatggtcattggaaac
ctggtggtactgaacctctttttggccttgcttctgagctcgtttagtgcagacaacctt
gcagccactgatgatgacaatgaaatgaacaatctccaaatcgccgtggataggatgcac
aagggaatagcttatgtaaagagaaaaatatatgaatttattcaacagtccttcgtcaga
aaacaaaagattttagatgaaattaaaccactcgatgatctaaataacaggaaagattgt
tgtatgtccaatcatacgggagaaactgggaaagatcttgactatcttaaagatgtaaat
ggaaccacaagtggaataggaactggcagcagtgttgaaaaatacattattgatgaaagt
gattacatgtcattcataaacaatcccagtcttactgtgacggtaccaattgctgtagga
gagtcggactttgaaaatttaaacacagaggacttcagtagtgaatcagatctagaagaa
agcaaagagaaacttaatgaaagcagtagctcatctgagggcagcactgtagacattgga
gcacctgcagaagaacagccagtagtggaacctgaggaaacccttgaacccgaagcctgt
ttcactgaaggctgtgtacaaagattcaagtgttgtcaaatcagtgtggaagaagggaga
ggaaaacaatggtggaacctgagaagaacatgtttccgaatagttgaacataactggttt
gagaccttcattgttttcatgatcctccttagtagtggtgctctggcatttgaggatata
tatattgatcagaggaagacaatcaagacaatgttggaatatgctgacaaggttttcaca
tacattttcattctggaaatgcttctaaaatgggtggcatatggctatcaaacatatttc
accaatgcctggtgttggctggacttcttaattgttgatgtttcattggtcagtttaact
gcaaatgccttaggttattcagaacttggtgccatcaaatctctcaggacactaagagct
ctgagacctctaagagccttatcacgatttgaagggatgagggtggttgtgaatgccctt
ttaggagcaattccatccatcatgaatgtgctcctggtttgtcttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtgttaacaccaca
actggtgacatgtttgacatcagcgaagtgaataatcattctgattgcctaatactaata
gaaagaaatgagactgcccgatggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctctctttgcttcaagttgccacatttaagggatggatggatataatgtatgca
gcagttgattccagaaatgtggaactccagcctaagtatgaggaaagtctatacatgtat
ctttactttgttattttcatcatctttgggtccttcttcaccttgaacctgtttattggt
gtcatcatagataatttcaaccagcaaaaaaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgcaatgaaaaaattaggatcgaaaaagccacaa
aagcctatacctcgaccaggaaacaaatttcaaggaatggtctttgacttcgtaaccaga
caagtttttgacataagtatcatgattctcatctgtctcaacatggtcacaatgatggta
gaaactgacgaccagagtgactatgtgaccaacattttgtcccgcatcaacctggtgttc
attgtgctgttcactggagagtgtgtgctgaagcttatctccctccgccattattatttt
acaattggctggaatatttttgattttgtggttgtcattctttccattgtaggtatgttt
ctggctgagttgatagagaaatattttgtgtcccctaccctgttccgagtgatccgtctt
gccaggattggccgcatcctgcgtctgatcaaaggggccaaggggatccgcacgctgctc
tttgctttgatgatgtccctgcctgcgctgttcaacatcggcctcctgctcttcctggtc
atgttcatctacgccatctttggaatgtccaacttcgcctatgttaagagggaggtggga
attgatgacatgttcaactttgagacctttggcaatagcatgatctgcctgttccagatc
accacctctgctggctgggatggactgctagcacctattctcaacagtaaaccacctgat
tgtgaccccaataaagttaaccctggcagctcagttaagggagactgcgggaacccatct
gttgggattttcttctttgtcagttacatcatcatatcatttctggtcgtggtgaacatg
tacatcgctgtcatcctcgagaacttcagtgttgctactgaagaaagtgcagagcccctg
agtgaggatgactttgagatgttctacgaggtgtgggagaagtttgatcccgatgccacc
cagttcatggaatttgaaaagctctctcagtttgcagctgctcttgaacctcccctcaac
ttgccacaaccaaacaaactccagcttattgccatggatttgcccatggtcagtggggac
cgcatccactgccttgacatcttatttgctttcacgaagcgtgttctgggggagagtgga
gagatggatgctctccgaatacagatggaagagcgattcatggcctcaaacccgtcaaag
gtctcctatcagccaataactacaactttaaaaagaaaacaagaggaggtatctgcggtt
attattcagcgtgcttacaggcgccaccttttaaagcgaactgtaaaacaagcttcattt
acgtataataaaaataaaatcaaaggcggggctaaccttcttgtaaaagaagacatgata
attgacagaataaatgaaaactctatgacagaaaagactgatctgaccatgtccacagca
gcttgtccaccctcctatgatcgggtaacaaagccaattgtggaaaaacacgagcaagaa
ggcaaagatgaaaaagccaaagggaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (43)   

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