KEGG T01009: 397027

Sus scrofa (pig): 397027

Entry

397027 CDS T01009

Gene name

CAPN1

Definition

calpain 1, (mu/I) large subunit (EC:3.4.22.52)

Orthology

K01367

calpain-1 [EC:3.4.22.52]

Organism

ssc Sus scrofa (pig)

Pathway

ssc04141	Protein processing in endoplasmic reticulum
ssc04210	Apoptosis
ssc05010	Alzheimer's disease

Class

Genetic Information Processing; Folding, sorting and degradation; Protein processing in endoplasmic reticulum [PATH:ssc04141]
Cellular Processes; Cell growth and death; Apoptosis [PATH:ssc04210]
Human Diseases; Neurodegenerative diseases; Alzheimer's disease [PATH:ssc05010]

SSDB

Motif

Pfam:

Peptidase_C2 Calpain_III EF-hand_6 EF-hand_8 EF-hand_1 EF-hand_7 EF-hand_5

Other DBs

NCBI-GI:

NCBI-GeneID:

Ensembl:

UniProt:

Position

AA seq 650 aa
MAEEVITPVYCTGVSAQVQKLRAKELGLGRHENAIKYLGQDYEQLRAHCLQSGSLFRDEA
FPPVPQSLGFKELGPNSSKTYGVKWKRPTELFSNPQFIVDGATRTDICQGALGDCWLLAA
IASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHS
AQGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGVTEWYELRKAPSDLYSIILK
ALERGSLLGCSIDISSVLDMEAVTFKKLVKGHAYSVTGAKQVNYQGQMVNLIRMRNPWGE
VEWTGAWSDGSSEWNGVDPYQRDQLRVRMEDGEFWMSFRDFLREFTRLEICNLTPDALKS
QRVRNWNTTLYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEETDDPEDDYGGRESGCSF
VLALMQKHRRRERRFGRDMETIGFAVYEVPPELVGQPVHLKRDFFLANASRARSEQFINL
REVSTRFRLPPGEYVVVPSTFEPNKEGDFVLRFFSEKKAGTQELDDQVQAILPDEQVLSE
EEIDENFKALFRQLAGEDMEISVRELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDRD
GNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGEA

NT seq 1953 nt +upstreamnt +downstreamnt
atggccgaggaggtcatcactccggtgtactgcactggggtgtctgcacaagtgcagaag
ctgcgggccaaggagctgggcctgggccgccatgaaaatgccatcaagtacctgggccag
gattacgagcagctccgggctcactgcctgcagagtgggagcctcttccgtgatgaggct
ttccctccagtgccgcagagcctgggcttcaaggaactgggccccaactcctccaaaacc
tatggcgtcaagtggaagcgtcccacggagctgttctcaaacccccagttcatcgtggat
ggagccacccgcacagacatctgccagggagcactgggggactgctggctcctggctgcc
atcgcctcccttaccctcaacgacaccctcctgcaccgagtagttccacacggccaaagc
ttccagaatggctatgctggcatcttccatttccagctgtggcagtttggggagtgggtg
gacgtggtggtggatgacctgctgcccaccaaagacgggaagctggtgttcgtgcactct
gcccaaggcaatgagttctggagcgccctgctcgagaaggcttatgccaaggtgaatggc
agctacgaggccctgtccgggggcagcacctccgagggctttgaggacttcacgggcggg
gtcaccgagtggtacgagctgcggaaggcacccagcgacctctacagcatcatcctcaag
gcgctggagcgaggctccctgctgggctgctccattgacatctccagcgttctggacatg
gaggctgtcaccttcaagaagctagtgaagggccacgcctactccgtgactggggccaag
caggtgaactaccagggccagatggtgaacctgatccggatgcggaacccctggggcgag
gtggagtggacgggagcctggagtgatggctcctcggagtggaacggcgtggacccctac
cagcgggatcagctccgggtccggatggaggatggggagttctggatgtccttccgagac
ttcttgcgtgagttcacccgcctggagatctgcaacctgacgcccgacgcgctcaagagc
cagagggtccgcaactggaacaccaccctctacgagggcacctggcggcgggggagcacc
gcggggggctgccgcaactacccagccaccttctgggtgaacccccagttcaagatccgg
ctggaggagacggatgacccagaggacgactacgggggccgtgagtcgggctgcagcttc
gtgctcgccctcatgcagaaacaccgccgccgggagcgccgattcggacgcgacatggag
accatcggctttgccgtctatgaggtccctccggagctggtgggccagccggtgcacctg
aagcgggacttcttcctggccaacgcctctcgggcccggtccgagcagttcatcaacctg
cgggaggtcagtacccgcttccgcctgccgcccggcgagtacgtggtggtgccttccacc
ttcgagcccaacaaggagggcgactttgtgctgcgtttcttctcagagaagaaagccggg
acccaagagctggacgaccaggtccaggccattctccccgacgagcaagtgctctcggaa
gaggagattgatgagaacttcaaagcgctcttcagacagctggcaggggaggacatggag
atcagcgtcagggagctgcgcaccatcctcaacaggatcatcagcaaacacaaagacctg
cggaccaagggcttcagcctggagtcctgccgcagcatggtcaacctcatggaccgtgat
ggcaacgggaagctgggcctggtggaattcaacatcctgtggaaccgcatccggaattac
ctgtccatcttccggaagttcgacttggacaagtcaggcagcatgagcgcctacgagatg
cggatggccatcgagtctgcaggtgaggcctga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (4)   
   UniGene (1)   
   ENSEMBL-SSC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (15)   
   RefSeq(nuc) (1)   
   GenBank (7)   
   EMBL (7)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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