KEGG T01396: SPSINT

Staphylococcus pseudintermedius HKU10-03: SPSINT_1345

Entry

SPSINT_1345       CDS       T01396

Name

(GenBank) MiaB family protein, possibly involved in tRNA or rRNA modification

K18707

threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]

Organism

ssd Staphylococcus pseudintermedius HKU10-03

Brite

KEGG Orthology (KO) [BR:ssd00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ssd03016]
    SPSINT_1345
Enzymes [BR:ssd01000]
2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     SPSINT_1345
Transfer RNA biogenesis [BR:ssd03016]
Prokaryotic type
  tRNA modification factors
   Methylthiotransferases
    SPSINT_1345

SSDB

Motif

Pfam:

UPF0004 Radical_SAM TRAM B12-binding DDE_Tnp_1_7 GspL_C

Other DBs

NCBI-ProteinID:

ADV05873

Position

complement(1391696..1393045)

AA seq 449 aa
MSTVAFHTLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVINTCTVTNTGDKKSRQI
IRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDIVVGTQDRHKLLDYIDTYQDERQPIN
GVSNIMKNRTYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKKVIEQ
ATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETVDGLERIRISSIEASQLTDE
VIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSMAHFSERIQKLHAALPGLAVTSDVI
VGFPGETEAEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLIE
LSNQLAKTYASKFENDVLEVIPEEKGSQDGLLVGYADNYMKVEFVGDESLIGQICKVKVT
QAGYPINQGTLLRVVEHATNASENEKVLN

NT seq 1350 nt +upstreamnt +downstreamnt
atgtctacagttgcctttcatacattagggtgtaaagtaaaccattatgaaactgaagca
atttggcagttatttaaagatgcagaatataaccgtgtggattttgaacaaaatgcggac
gtattcgtgattaatacatgtacagtaacaaatacaggtgataaaaagagtcgccaaatt
attcgacgtgcgattcgacaaaatcctgatgcggttatatgtgtgacaggatgttatgca
caaacgtcatcagctgaaattatggaaattcctggtgtcgatattgttgtcggtactcaa
gatcgtcataaattattagattacatcgatacgtatcaagatgaacgtcaaccgattaac
ggtgtaagcaatattatgaaaaatcgtacatacgaagagttagatgtcccatattttaca
gatcgaacacgtgcatcgcttaaaattcaagaaggttgtaataacttttgtacgttctgt
attattccatgggcacgtggtttaatgcgttcaagagacccaaaaaaggtaattgaacaa
gcgacacaactcgttaactcagggtataaagaaattgtgctcactggtattcatactggg
ggctacggtcaagacttgaaagactacaacctagcacaattgttaagagatttagaaaca
gttgatggcttagaacgtattcgtatttcttcaatcgaagcgagccaattaacggatgaa
gtgattgaagtattgcaacagtcacaaaaagtagtacgtcatttacacattccacttcaa
tcgggctcagacagtgtgctcaaacgtatgcgccgtaaatattcaatggctcatttttct
gaacgtattcaaaaattacacgctgcgttacctggtttagccgttacaagcgatgttatt
gttggtttcccaggtgagactgaagcagaatttcaagaaacgtatgattttatcgttaac
caccatttttctgaattacacgtctttccatattcaccacgaattggtacacctgctgca
cgtatggatgatcaaattgatgaagaaattaaaaatgaacgtgtccataaattgattgaa
ttgagcaatcaacttgctaaaacttatgcttcaaaatttgaaaatgatgtattagaagta
attccggaagaaaaaggttctcaagacggcttactcgttggctatgcagataactatatg
aaagttgaatttgtaggtgacgaatctcttattggacaaatttgcaaagtgaaagtgaca
caagccggttatccaatcaatcaagggacattactacgtgtcgttgaacatgcgacgaat
gcttcagaaaatgaaaaggtgttaaattag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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