KEGG   Staphylococcus pseudintermedius HKU10-03: SPSINT_1658
Entry
SPSINT_1658       CDS       T01396                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ssd  Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03030  DNA replication
ssd03410  Base excision repair
ssd03420  Nucleotide excision repair
ssd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ssd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SPSINT_1658
   03410 Base excision repair
    SPSINT_1658
   03420 Nucleotide excision repair
    SPSINT_1658
   03430 Mismatch repair
    SPSINT_1658
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ssd03032]
    SPSINT_1658
   03400 DNA repair and recombination proteins [BR:ssd03400]
    SPSINT_1658
Enzymes [BR:ssd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SPSINT_1658
DNA replication proteins [BR:ssd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SPSINT_1658
DNA repair and recombination proteins [BR:ssd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SPSINT_1658
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SPSINT_1658
   MMR (mismatch excision repair)
    DNA ligase
     SPSINT_1658
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SPSINT_1658
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH Relaxase_C RNA_ligase zf-NADH-PPase
Other DBs
NCBI-ProteinID: ADV06186
Position
complement(1727463..1729466)
AA seq 667 aa
MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTSDSPTV
RVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRVRDAVGEVEYMCELKIDGLAVSL
KYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKISFEVRGEAYMPRQSFLKLNE
AKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFLYSINDFTELDASSQSEALDELD
ELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYDIDGIVIKVNHLEHQEEMGFTQKSP
RWAIAYKFPAEEVITELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDLIHEK
DIRIGDSVVIKKAGDIIPEVVRVILDRRPEGAETYHMPTHCPSCDHELVRIEGEVALRCI
NPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIEQLYTHALIKDVADIFYLTKEDLLPLERM
GEKKAQKLIDAIETSKARSLENLLFGLGIRHLGVKASQVLAEKYETMDRLLTVTEDELVE
IYDVGEKLAQSLVTYLENEDIRALIEKLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTG
KLQQMTRNEATNWLKLQGAKVTSSVTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFID
KQNEINE
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgtcatctatagctcaacgtgttgaaatattgcacaaattattgcatcaatacaactat
gaataccacgttcaagacaatccaagtgttccagatagtgaatacgacaaattattacat
gaattgattgatattgagacaaaacatcctgaactgaaaacttcggattcacctactgta
cgtgtaggcggcgaggcacagtcatcgtttgaaaaggtcaatcatgatactccgatgtta
agcttatctaacgcatttaatgaagcggatttaagaaagttcgatcaacgtgtgcgcgat
gcagtcggtgaagttgaatatatgtgtgaattgaaaattgatggtttagccgtatcatta
aaatatgtcgatggaaagctcgttcaaggcttaacacgcggtgacggcacaacaggtgaa
gacattactgaaaatttaaagacgatttatgcgatcccacttactttagacaaaaagatt
tcctttgaagtgcgtggtgaggcttacatgccgcgtcaatcatttttaaagttgaatgag
gcgaaagcggcgcgtgatgaacaaccgtttgccaatccgagaaatgccgctgcaggatcg
ttacgccaactcgattcaaaacttgcagcagctcgaaaattggacatctttttatacagt
attaatgactttacagaacttgatgcgtcatctcaaagtgaagcattagatgaactggac
gaacttggttttaaaacgaaccatgagcgtgaaaaagtaaaaacgattgatgaagtgctg
gaatatattaaaaaatggacaaatcagcgtgaacaattaccttatgatattgatggaatt
gtcattaaagtgaatcatcttgagcatcaagaggagatgggctttacacaaaaatcaccg
agatgggcgattgcatacaagtttcctgctgaagaagtcattacagaactgttagatatt
gagttgagtattggtcgtacaggagtagtgacaccaactgcgatactcgaacccgtacgt
gtggcaggcacaaccgtttctcgtgcgtcgttacataacgaagacttaattcatgagaaa
gacattcgtattggtgatagtgtcgtcataaaaaaagcaggagacatcattccggaagtc
gtgcgtgtcattttagatcgtcgtccagagggtgccgagacgtatcacatgccgacacat
tgtccaagctgtgatcatgaacttgtacggattgaaggcgaagtggcactccgctgtatc
aacccaaaatgtcaggcacagctcgttgaaggtttaattcatttcgtatctcgacaagcg
atgaatattgacggcttaggtacgaaaataattgaacaattgtatacacacgcattgatt
aaagatgtagctgacattttctacttgacgaaagaagatttattaccgttagaacgtatg
ggtgaaaagaaagcgcaaaagttaattgatgcgattgaaacttcaaaagcacgctccctc
gaaaacttattatttggactgggtattcgtcatttaggtgttaaagcgagtcaagtacta
gcagaaaaatacgaaacgatggaccgactattaacagtcactgaagatgaattagttgaa
atttatgacgtcggtgaaaagttagcgcaatccttagtgacgtatttagaaaatgaagac
attcgcgcactgattgaaaagttgcaatcaaaaggtgtcaatatgacgtttaaagggcaa
aaattatcgcaaattgaaggccatccagaatttgcaggtaaaacaatcgtcttaacaggt
aaacttcaacagatgacacgtaatgaggcaacgaattggttgaaactacaaggtgcaaaa
gtaacaagtagcgtaacgaagtccacagatcttgtcattgcaggtgaagatgcaggttca
aaattaacaaaagcgcaatcacttggtacaatgatttggacagaacaagattttattgat
aagcaaaatgaaattaatgagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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