KEGG   Shewanella sediminis: Ssed_0117Help
Entry
Ssed_0117         CDS       T00596                                 

Definition
formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sse  Shewanella sediminis
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:sse00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Ssed_0117
Enzymes [BR:sse01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Ssed_0117
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Ssed_0117
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
complement(130893..131714)
Genome map
AA seq 273 aa AA seqDB search
MNMPELPEVEVTRQGITPHLVDQQATALTVRNASLRWPVPDIAQQIVGETIRNVRRRAKY
LLIDTDAGTTIVHLGMSGSLRIVSRNTPVEKHDHIDLELASGKILRFNDPRRFGAWLWCE
LPEEAHPLLSKLGPEPLKDGFNPTYLEQILKNKKKAIKLCLMDNHIVVGVGNIYANEALF
AAGIHPETQAGNVDTERLTILVTEVKQILANAIKQGGTTLKDFTNAEGKPGYFAQKLHVY
GRGGETCTQCGNLLSEIKLGQRATVFCGLCQTK
NT seq 822 nt NT seq  +upstreamnt  +downstreamnt
atgaatatgcctgaattgcccgaagtagaagttacccgtcaggggatcactcctcattta
gtcgatcaacaagcgacggcactcactgtgcgtaacgccagccttcgctggccggtaccg
gatatcgcacagcagatcgtaggggagaccattcgaaacgtgcgtcgtagggcgaagtac
ctgcttatcgataccgatgccggcacgacaattgtgcatcttggcatgtcgggaagtctg
agaatcgtctccaggaacacgcctgtcgagaagcatgatcatatcgatttagagctggcc
agtggcaaaatactgagatttaacgacccacgccgcttcggtgcctggctatggtgtgaa
ctgcccgaagaggcgcatccactgctgtcaaagctcggacctgagccgctaaaagacggc
tttaatcccacctatcttgaacagatattaaaaaataagaagaaagccattaagctctgt
ttgatggataaccatattgttgtgggtgtcggtaatatctatgccaacgaagccctgttt
gcggcaggcattcatcccgaaacgcaggcgggcaatgtcgacaccgagaggttgacgatt
ctggttaccgaggtaaaacagatcttagcgaacgccatcaagcagggagggaccacattg
aaagacttcaccaatgccgaaggaaagcctggatactttgcccagaagctgcatgtttac
gggcgaggcggtgagacctgcacccaatgtggcaatctgctcagcgagatcaagctgggc
cagagggccacagtattttgtggcctatgtcagactaaatga

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