KEGG T00596: Ssed

Shewanella sediminis: Ssed_3216

Entry

Ssed_3216 CDS T00596

Definition

tryptophan synthase subunit beta

Orthology

K06001

tryptophan synthase beta chain [EC:4.2.1.20]

Organism

sse Shewanella sediminis

Pathway

sse00260	Glycine, serine and threonine metabolism
sse00400	Phenylalanine, tyrosine and tryptophan biosynthesis
sse01100	Metabolic pathways
sse01110	Biosynthesis of secondary metabolites
sse01230	Biosynthesis of amino acids

Module

sse_M00023

Tryptophan biosynthesis, chorismate => tryptophan

Class

Metabolism; Amino acid metabolism; Glycine, serine and threonine metabolism [PATH:sse00260]
Metabolism; Amino acid metabolism; Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sse00400]

SSDB

Motif

Pfam:

PALP

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(3899480..3900682)

AA seq 400 aa
MSKFEFAPMPDNQGFFGEYGGQIIPPELKSAMDAINQAYEEIRQTQGFQDELMQLFQDYV
GRPSPIYHAKRLSDKLGGAQIYLKREDLNHTGAHKINHCLGEALLAKYMNKKKVIAETGA
GQHGVALATACALVGIPCEIHMGQVDIEKEHPNVTKMKILGCKLVPVTQGTATLKDAVDS
AFVEYLKNPKDYLYAIGSVVGPHPFPKMVRDFQSIIGREAREQFQQKFNKLPDIITACVG
GGSNAIGLFTAFLDDSEVKIVGVEPAGKGLDTTEHSATLTLGTPGAIHGFKCYLLQDEAG
EPLPVHSIASGLDYPGVGPQHCYLKDIERAEYDSVTDEECLDAFMTLSRVEGIIPALESA
HAVAWAMREAAKLPKELQILVNLSGRGDKDADYVADKLGL

NT seq 1203 nt +upstreamnt +downstreamnt
atgagcaagttcgaattcgcccccatgcccgacaatcaaggtttttttggtgagtatggc
gggcagattattccgcctgagctaaagagtgcgatggatgcgattaatcaagcctacgaa
gagattcgacagactcaaggcttccaggatgagctgatgcagctgttccaggactatgtg
ggtcgcccaagccccatctatcatgccaaacgcttaagcgacaaactcggcggcgcgcag
atctatctcaagcgtgaagaccttaaccacaccggggctcataagatcaatcactgcctg
ggtgaggcgttactcgccaagtacatgaacaagaagaaggtgattgccgaaactggtgcc
ggccaacatggtgtcgcacttgctactgcctgcgccttggtggggatcccttgtgaaatt
catatgggtcaggtcgacatagagaaagagcatcctaacgttaccaaaatgaaaatctta
ggctgtaagctggtgcctgtcacccaaggtactgccaccttaaaggacgctgtcgacagc
gcctttgtggaatacctgaagaatccgaaagactatctttatgctatcggctctgtcgtt
gggcctcatcctttccctaagatggtgcgtgattttcaaagcattatcggtcgtgaggcc
agagagcagtttcaacagaaatttaataaacttcccgatatcatcactgcctgtgtgggg
ggcggctcgaacgccatcggcctattcactgcatttctggatgatagcgaggtgaaaatt
gtcggcgtcgaacctgccggtaaagggctggataccacggagcactcggctaccctcact
ttgggcacgccgggcgccattcatggctttaaatgctatctgctgcaagatgaagcgggt
gagccactaccggttcactccatcgcctcaggcttagattacccgggagtaggtccccag
cactgttacctcaaagatattgagcgtgcagaatatgattcggtcacagatgaagagtgc
ttagacgcctttatgacactgtcgcgggtcgaggggattattccggctctggagagtgcc
cacgccgtggcttgggcgatgcgcgaagccgccaagctaccgaaagagttgcaaatttta
gtcaacctgtctggccggggtgataaagacgccgactatgtagccgacaagcttggtctt
taa

All links

Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SSE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (25)   

Download RDF

DBGET integrated database retrieval system