KEGG T00596: Ssed

Shewanella sediminis: Ssed_4338

Entry

Ssed_4338         CDS       T00596

Name

(GenBank) tRNA (uracil-5-)-methyltransferase

K00557

tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]

Organism

sse Shewanella sediminis

Brite

KEGG Orthology (KO) [BR:sse00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sse03016]
    Ssed_4338
Enzymes [BR:sse01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.35  tRNA (uracil54-C5)-methyltransferase
     Ssed_4338
Transfer RNA biogenesis [BR:sse03016]
Prokaryotic type
  tRNA modification factors
   Methyltransferases
    Ssed_4338

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_25 Methyltransf_4 MTS Methyltransf_15 Met_10 TRM PrmA Cons_hypoth95 Methyltransf_11 Methyltransf_31 Methyltransf_12

Other DBs

NCBI-ProteinID:

ABV38940

UniProt:

A8G1G7

Position

5315003..5316100

AA seq 365 aa
MNLAAMDPNTYDAQLEEKRIKLEQIFTDFDTPKLEVFSSEPAHYRMRAEFRIWHDGEDMY
YYMFDKALDSKVRCDQFLPASELINKVMPALMEELRPNPTLRHRLFQIDFLSTLSGEILV
SLLYHKQLDAQWEIEAKALKEKLAATFNINIIGRARKQKLIIDKDFVIESLTVNNEQLQY
HQIENSFTQPNGKVSVKMLEWAIDVTKNSQGDLLELYCGNGNFSIALAQNFDRVLATELA
KPSVESAQYNIKINKIDNLQIIRMSAEDFTDAMAKKRTFRRLEGIDLDSYNCNTIFVDPP
RAGMDPDTVKLVQGYDRIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGV
FLERR

NT seq 1098 nt +upstreamnt +downstreamnt
atgaatttagcagcaatggatcctaatacctatgatgcgcaactcgaagaaaaacgtatc
aagctggaacagatattcactgattttgatacgccaaagctagaagtttttagttccgaa
ccggctcattatcgtatgcgtgccgaattccgcatatggcatgacggtgaggacatgtac
tactacatgtttgataaagcactcgacagcaaagtccgttgcgatcaatttctccctgct
agtgaattgatcaataaggtgatgccagcccttatggaagagttaaggcccaatccaact
ctgagacataggttattccagatagatttcttatcaacgcttagtggcgaaatcttagtg
tctttgttgtatcacaagcaacttgatgcacagtgggagattgaagctaaagccttaaaa
gagaagttagcagccactttcaacatcaatattattggtcgagctcgtaaacagaaactg
atcatagacaaagactttgtcatcgagtcattaactgtcaataacgaacagcttcaatat
catcagattgaaaatagctttacccaacctaatggtaaagtctcggtgaagatgttggag
tgggctattgatgtcactaaaaatagccaaggcgatctactggagctttattgtggtaat
ggtaatttttcaattgccctggcacaaaatttcgatcgcgtattagccaccgaactcgca
aaaccttcggttgagtccgcacaatacaatatcaagataaataagatcgacaacctgcag
atcatccgtatgtcggcagaagattttaccgatgcaatggcaaagaagcgtaccttcaga
cgcctggaggggatcgatttagatagctacaactgtaataccatcttcgttgacccacct
agagcaggtatggatccagataccgttaagctggtgcaaggctacgatcgtatcgtttat
atctcttgtaacccgaatactttaatcgacaacttagctgagctgagcaaaacacataag
atcacgcgctttgctctatttgaccaattcccatatacagatcatatggaatcgggagtc
ttcttagagagacgctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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