KEGG   Solibacillus silvestris DSM 12223: SOLI23_07720
Entry
SOLI23_07720      CDS       T04506                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ssil  Solibacillus silvestris DSM 12223
Pathway
ssil03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SOLI23_07720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssil03400]
    SOLI23_07720
Enzymes [BR:ssil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SOLI23_07720
DNA repair and recombination proteins [BR:ssil03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SOLI23_07720
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M RNA_ligase PRD
Other DBs
NCBI-ProteinID: AMO85473
Position
1593134..1594969
AA seq 611 aa
MKPMLLTDVPDIPLGDDWLYEAKYDGYRCILVWDKGKNIPELKSRNGNVLNEKFPEIIRF
CKSIYAEIEPYLPLIFDGEIVYLINHFQSKFSFVQKRGKMTNQKNIESNSKTFPCHYIVF
DLLRLKGKDKGNSRLTTRKQLLSDLFERLNLLDTVQYNDSKRLQAIDVFENPHLLWQKVT
SHNGEGIIAKKRSSKWLENTRTKSWQKIKNWKHVNVILTKFDQLNGFFNGAIYQEDMLME
VVSFKHGLSEEESKTLIAFFKSKGTVKEKSIFEIPPSICVTVACIDFDGSKLREPRFHSF
QHYLDVSECNWQQMQRQLNPIPESVIVTHPDKPVFPASHITKDDYLYYLQKVAPMMMPFL
QDRLLTVIRYPHGVPGESFYQKNYIENLPEFITTPLVDDTHFILCNNLESLLWLGNQLAL
EFHIPFQPVSSEQPTEIVFDLDPPSVHEFGLAVDAAVKFKTIMDYFKLTSFIKTSGGKGM
QIYIPLPLHTFSYEDTGVFTEFICRFLVQQFPDSFTIERMKKNRGKRLYLDYVQHREGKT
IVAPYSPRGNNKGLIATPLLWEEVNEKLTPDLFTIPNIIKRLERMADPFKNFREVGERQP
FQAALDQITGK
NT seq 1836 nt   +upstreamnt  +downstreamnt
gtgaaacctatgttattaaccgatgtaccggatattccattaggtgacgattggttgtat
gaggcaaagtatgacggttatcgctgtattttagtttgggacaagggcaaaaatattcct
gagctgaaaagccgaaatgggaatgtattaaatgaaaaatttccagaaatcattcgtttc
tgtaagagtatttatgctgaaatcgaaccatatttaccgctgatttttgacggagaaatc
gtttatttaatcaatcattttcaaagtaaattctcgtttgtgcaaaaacgtggaaaaatg
acgaatcaaaaaaatatcgaatcaaattcaaagacatttccatgtcattatattgtgttt
gatttactgagattaaaagggaaagataagggaaatagccggttaacaacaagaaaacaa
ttattatccgatctttttgaacggctcaatttacttgacactgttcaatataatgattca
aagagacttcaagcgattgatgtatttgaaaatccgcatttactttggcaaaaagtaacg
tcccataatggggaagggatcattgcgaaaaagcgcagcagcaaatggctggaaaatacg
agaacgaaaagctggcagaaaataaaaaactggaaacatgtaaatgtcatcctcacgaaa
tttgatcaattaaacggtttttttaatggtgcaatctatcaagaagacatgcttatggaa
gtggtttcgtttaaacatggtttgtccgaggaagaaagcaaaacattgatcgcctttttt
aaatcgaaagggacagtgaaggagaaaagtatattcgagattcccccttcaatttgcgta
accgttgcctgtattgatttcgatggcagtaaattgagagagccgcgctttcattcgttc
caacattatctggacgtttccgagtgcaactggcagcaaatgcagagacaattaaacccg
attccggaaagtgtcatcgtcacccatccggacaaaccggtttttcctgctagccatatt
acaaaggatgactatttgtattatttacagaaggtagcgcccatgatgatgccttttctg
caggaccggttattgacggtcatccgttatccgcacggagtacccggtgaaagcttctac
cagaaaaactatatcgaaaacttgccggaatttatcacaactccgttagtagacgacacc
cattttatcttgtgcaataatctcgaatccctactgtggttgggaaatcagctcgctttg
gaatttcatattccgttccagccggtcagttcagaacagccgactgaaattgtatttgat
ttggatccaccttccgttcatgagtttggattggcggtagatgctgctgtaaagtttaaa
acgataatggattactttaaactgacaagctttatcaaaacgtctggaggaaagggcatg
caaatctatatcccattgccactgcacacattttcttatgaagatacgggtgtatttacc
gagtttatatgccgatttctcgtacagcaatttcctgattcgtttacaatcgagcggatg
aagaaaaacagggggaaaaggctgtatttggattatgtccagcatcgggaaggcaaaacg
attgtggcaccatattcaccacgcggcaataataaaggattaatcgccactccgttatta
tgggaagaagtaaacgagaaattaacgcctgatcttttcacgattccaaatataataaaa
cgtctggaacgcatggcggatcctttcaaaaatttcagggaagtgggtgagcggcagcca
ttccaagctgctctagatcaaataactgggaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system