KEGG   Sclerotinia sclerotiorum: SS1G_11612
Entry
SS1G_11612        CDS       T01071                                 
Name
(RefSeq) hypothetical protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
ssl  Sclerotinia sclerotiorum
Pathway
ssl03018  RNA degradation
ssl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SS1G_11612
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SS1G_11612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssl03019]
    SS1G_11612
   03041 Spliceosome [BR:ssl03041]
    SS1G_11612
Messenger RNA biogenesis [BR:ssl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SS1G_11612
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     SS1G_11612
Spliceosome [BR:ssl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    SS1G_11612
 Complex C
  U2 snRNP components
    SS1G_11612
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 5483803
NCBI-ProteinID: XP_001587619
UniProt: A7F1Z1
Position
Unknown
AA seq 74 aa
MADIDDGTSAPAEPLDLAYDSHCNLVLGDVVETIYVVEEGEEDDEEEIIKTVVKKSEMLF
VRGDSVILISPRSS
NT seq 225 nt   +upstreamnt  +downstreamnt
atggcagatattgatgatggtacatctgcaccagccgaaccccttgatctggcgtatgat
agtcattgcaatttggtattgggtgatgtggtagagaccatatatgttgtggaggagggt
gaagaagatgatgaagaggaaatcataaagaccgttgttaaaaaatccgaaatgttgttt
gttagaggcgacagtgttatacttatttcacccagatcttcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system