KEGG   Sediminispirochaeta smaragdinae: Spirs_1651
Entry
Spirs_1651        CDS       T01287                                 
Name
(GenBank) tRNA pseudouridine synthase A
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
ssm  Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:ssm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ssm03016]
    Spirs_1651
Enzymes [BR:ssm01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     Spirs_1651
Transfer RNA biogenesis [BR:ssm03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    Spirs_1651
 Prokaryotic type
    Spirs_1651
SSDB
Motif
Pfam: PseudoU_synth_1 DUF2344
Other DBs
NCBI-ProteinID: ADK80778
UniProt: E1R613
Position
1767587..1768330
AA seq 247 aa
MIVAYDGRKFSGWQVQREDRTVQGVIEAALESMEKQKVRVFAAGRTDSGVHARGQVVHFD
TSLSSIEADKFAPALNAILPADVRIVGSYAVPDDFHARYSAKARSYRYFLYPGVCVSPLL
RPYCYARRSLPSIGALNRAVSPLLGSHDFSSFSASGDPSPSKVRVIYQAVFLQHRGMIEF
RITGNAFLWRMVRSIVGTALEVASAEEPARAMRLILDEKDRSLAGTTAPARGLFFWRVHY
TMEQLYG
NT seq 744 nt   +upstreamnt  +downstreamnt
atgatcgttgcctatgacggaagaaaattttccggatggcaggtccaaagggaggacaga
accgttcagggggttattgaggcggccctggagtccatggagaagcaaaaggtgagggtg
ttcgccgccggccgtaccgattcgggggtccacgcccggggccaggtcgtccatttcgat
acgagcctttcctcaattgaagcggataaattcgctcctgctttgaacgccatcctgcct
gccgacgtccgtattgtcggctcctatgccgttcccgatgattttcatgcccgctactct
gcgaaggctcgaagttatcgctatttcctttacccgggagtttgcgtttccccgctcctg
cgcccctattgctatgcccgtaggtccctgccgtccattggggccctcaacagggctgtc
tctcctttattgggcagccatgatttttctagcttttccgcatcaggtgatccctcgccc
tcaaaggtcagggtgatctatcaggcggttttcctgcagcataggggtatgatagagttt
agaataacgggaaacgccttcctgtggcgtatggttcgttcgattgtcggaaccgccctt
gaggtggcttctgccgaggagcctgctcgagccatgaggctcattcttgatgagaaggat
cggagcctcgccggtacgactgccccggcgagggggctttttttctggcgggttcattac
accatggagcagctttatggatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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