KEGG   Sediminispirochaeta smaragdinae: Spirs_4306
Entry
Spirs_4306        CDS       T01287                                 
Name
(GenBank) DNA gyrase, B subunit
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
ssm  Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:ssm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ssm03032]
    Spirs_4306
   03400 DNA repair and recombination proteins [BR:ssm03400]
    Spirs_4306
Enzymes [BR:ssm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Spirs_4306
DNA replication proteins [BR:ssm03032]
 Prokaryotic type
  DNA Topoisomerases
   Spirs_4306
DNA repair and recombination proteins [BR:ssm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Spirs_4306
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3
Other DBs
NCBI-ProteinID: ADK83379
UniProt: E1RA60
Position
complement(4651841..4653751)
AA seq 636 aa
MQNSYSAQNIQVLKGLDAVRKRPGMYIGSTGPEGLHHLVYEIVDNSIDEALAGFCDEILV
VIEKGNIIRVEDNGRGIPTDLHKEEGVSALEIVMTKLHAGGKFNKDTYKVSGGLHGVGVS
VVNALSEWCDVFVHRDGSIFYQKYDRGNPEKDVATVGETTRHGTITRFKPDGEIFETVEF
SFDVLSRRLRELAFLNKGIRIIIEDERLPQKKTKEFQFEGGVKSFVSFLSESKKPIHKEP
IYFEGIRDGIDLECALEYNEGYSENIFSFVNNINTREGGTHLVGFKTALTRTFNDFLKKS
KFAKKMDETFSGDDVREGLTAVVSVKVPDPQFEGQTKAKLGNSEVRGVVESLVAEHLTYY
FEENPKLIEKILEKITMAARARIAARKARDLTRRKSALESSSLPGKLADCAEKDPSKSEV
YIVEGDSAGGSAKQGRDRQFQAILPLWGKMLNVEKTRADKVLTNDKLQPIIATLGAGAGK
EFDISKVRYHKVIIMADADVDGSHIRTLLLTFFFRYMPELVERGYVYIAMPPLYKMQLGK
SITYAYDERDREKIMKSLFAEETEKVAIQRYKGLGEMNPNQLWETTMDPDSRKIMQVRLE
DAVEADQIFSTLMGEDVEPRRKFIEDNALMVSNLDI
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgcaaaacagttattctgcccagaacattcaagtgttaaaagggttggatgcagttcga
aaaaggccgggaatgtacattggctctaccggtcctgaagggctgcatcatttagtttat
gagattgttgacaacagcattgacgaggctcttgccggtttttgcgacgaaattttggtt
gtcattgaaaagggaaacatcatccgtgttgaagacaacggacgaggaattccaaccgat
ctccacaaagaagagggtgtgagcgccctcgaaattgtcatgacaaagctccatgccggt
ggaaagttcaataaggatacctataaggtatccggagggctccacggtgttggtgtttcc
gtcgtaaacgcattatccgagtggtgtgacgtatttgttcatcgtgatggctctattttt
tatcaaaaatatgatcggggaaatcccgagaaagatgtcgccactgtaggtgagaccacg
cgtcacggtacgattactcgatttaagccggatggtgagatctttgaaacggtggaattt
agttttgatgtcctttcccgtcgtcttcgggaacttgcttttttaaataagggcatcagg
atcatcatagaagatgagcgccttccccagaagaagacgaaagagttccagtttgagggc
ggtgtaaaaagcttcgttagtttcttaagcgaaagcaaaaagccgattcacaaggagccg
atttacttcgagggaatccgtgacggtatcgatctggagtgtgcccttgaatataacgag
ggatacagcgagaatatcttctcttttgtcaataatatcaacacaagggaaggcggaacc
catcttgtcggctttaaaacggcccttaccaggaccttcaatgattttctgaaaaaatca
aagtttgccaaaaaaatggacgaaaccttttccggtgatgatgtcagggaaggtctgacc
gccgtggtttccgtgaaggttcccgatccccagtttgaagggcaaacaaaggccaagttg
gggaactccgaggtacggggtgttgtcgaatctcttgttgccgagcatttgacttactat
tttgaggagaatcccaagctgatagaaaagatcctcgaaaagattaccatggcggctcgt
gctcgtatcgcagcgaggaaggctcgggatcttacccgccgcaaaagtgccttagagagt
tcaagtcttcctggaaagcttgccgattgcgccgagaaagatccttccaaaagcgaagtg
tatatcgttgagggagacagcgccggcggcagtgcaaaacagggcagggaccgtcagttt
caggccatattgcccctttggggaaagatgttaaatgttgaaaagaccagggccgacaag
gtgctcaccaacgacaagctgcaacctatcattgcgacactgggagcaggggccggaaaa
gagtttgacattagtaaggttcgatatcataaggtgatcatcatggcggatgccgatgtc
gacgggagccatatcagaaccttgctcctcacctttttctttcgctatatgccggaactg
gtcgagcgggggtatgtctatattgcaatgcctcctctttataagatgcaattgggaaag
tcaattacctacgcatatgatgaaagggatcgtgagaagatcatgaaatctctgtttgcc
gaggagactgaaaaggttgctattcagcggtataagggtctcggtgagatgaatccgaat
cagctgtgggaaacaactatggatccggattcaagaaaaattatgcaggtgcgacttgaa
gatgctgttgaagcagatcagatattttctacattgatgggtgaggatgtcgagcccaga
agaaagttcattgaagataatgctctgatggtatcgaacctcgatatatag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (45)   

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