KEGG   Shigella sonnei Ss046: SSON_1104
Entry
SSON_1104         CDS       T00274                                 
Symbol
rne
Name
(GenBank) RNase E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
ssn  Shigella sonnei Ss046
Pathway
ssn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SSON_1104 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssn03019]
    SSON_1104 (rne)
   03009 Ribosome biogenesis [BR:ssn03009]
    SSON_1104 (rne)
Enzymes [BR:ssn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SSON_1104 (rne)
Messenger RNA biogenesis [BR:ssn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SSON_1104 (rne)
Ribosome biogenesis [BR:ssn03009]
 Prokaryotic type
  rRNA processing factors
   SSON_1104 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: AAZ87829
ShiBASE_China: SSO1104
UniProt: Q3Z333
Position
complement(1182473..1185658)
AA seq 1061 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PTPAEPAATVVAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEA
KPERQQDRRKPRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA
EVTEKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEAVVAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTGVPVAAAVEPVVSAPVVEEVAEVVEAPV
QIAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEV
AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATVPMTRAPAPEYVP
DAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq 3186 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctttatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatc
agtctggcgggtagctatctggttctgatgccaaataacccgcgcgcaggtggcatttct
cgccgtatcgaaggcgatgaccgtaccgaattaaaagaagcactggcaagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggcgtaggcaaatctgctgaggcgctg
caatgggatttaagcttccgcctgaaacactgggaagccatcaaaaaagccgctgaaagc
cgcccggctccgttcctgattcatcaggagagcaacgtaatcgttcgcgcattccgcgat
tacttacgtcaggacatcggcgaaatccttatcgataacccgaaagtgctcgaactggca
cgtcagcatatcgctgcattaggtcgcccggatttcagcagcaaaatcaaactgtatacc
ggcgagatcccgctgttcagccactaccagattgagtcgcagatcgagtccgccttccag
cgtgaagtccgtctgccgtccggtggttcgattgttatcgacagcaccgaagcgttaacg
gccatcgacatcaactccgcacgcgcgacccgcggcggcgatatcgaagaaaccgcgttt
aacaccaacctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggc
ggcctgattgttatcgacttcatcgacatgacgcctgtacgccaccagcgtgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttct
cgctttggcctgctggaaatgtcccgccagcgcctgagcccatcactgggtgaatccagc
catcacgtctgcccgcgctgctccggtaccggtaccgtgcgtgacaacgaatcgctgtcg
ctctctattctgcgtttgatcgaagaagaagcgctgaaagagaacacccaggaagttcac
gccattgttcctgtgccaatcgcttcttatctgctgaatgaaaaacgttctgcggtgaat
gcgattgaaacgcgtcaggacggtgttcgctgcgtgattgtgccaaacgatcagatggaa
accccgcactaccacgtgttgcgcgtgcgcaaaggggaagaaacgccgaccttaagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaa
cgtaagcgtcctgaacaacctgcactggcaacctttgccatgccggatgtgccgccagcg
ccaaccccagctgaacctgccgcgactgtcgtagccccagcaccgaaagctgcaacggca
acaccagcagctcctgcacaacctgggctgttaagccgcttcttcggcgcactgaaagcg
ctgttcagcggtggtgaagaagccaaaccgaccgagcaaccaacaccgaaagcagaagcg
aaaccggaacgtcaacaggatcgtcgcaaacctcgtcagagcaaccgccgtgaccgtaat
gagcgccgcgacacccgtagtgaacgtactgaaggcagcgataatcgcgaagaaaaccgt
cgtaatcgtcgccaggcacagcagcagactgccgagacgcgtgagagccgtcagcaggct
gaggtaacggaaaaagcacgtaccaccgacgagcagcaagcgccgcgtcgtgaacgtagc
cgccgccgtaacgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaa
gagcaatctgttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgt
aaacagcgtcagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggta
gtcgcaccggtggttgaagaaactgccgctgccgaaccaattgttcaggaagctccagct
ccacgcacagaactggtgaaagtcccgctgccagtcgtagcgcaaactgcaccagaacag
caagaagagaacaatgctgataaccgtgacaacggtggcatgccgcgtcgttctcgccgc
tcgcctcgtcacctgcgcgtgagtggtcagcgtcgtcgtcgctatcgtgacgagcgttat
ccaacccagtcgccaatgccgttgaccgtagcgtgcgcgtctccggaactggcctctggc
aaagtctggatccgctatccaattgtacgtccgcaagatgtacaagttgaagagcagcgc
gaacaggaagaagtacaagtgcagccgatggtgactggggtccctgtcgccgccgctgtc
gaacctgttgttagcgcaccggttgttgaagaagtggctgaagttgtagaagcccccgtt
cagattgccgaaccgcaaccggaagtggttgaaacgacgcatcctgaagtgattgccgcc
gcagtaactgaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagtt
gcagaacacgcagaaccggtggttgaaccgcaggaagagacggcagatattgaagaagtt
gccgaaactgctgaggttgtggttgctgaacctgaagttgttgctcaacctgccgcgcca
gtcgtcgctgaagtcgcagcagaagttgaaacggtagctgcggttgaacctgaggtcacc
gttgagcataaccacgctacggtgccgatgacgcgcgctccggcaccggaatatgttccg
gatgcaccgcgtcacagtgactggcagcgccctacttttgccttcgaaggtaaaggtgcc
gcaggtggtcatacggcaacacatcatgcctctgccgctcctgcgcgtccgcaacctgtt
gagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   SHIBASE_CHINA (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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