KEGG S.solfataricus: SSO0225

Sulfolobus solfataricus: SSO0225

Entry

SSO0225 CDS S.solfataricus

Gene name rpoA1

Definition DNA-directed RNA polymerase subunit A' (EC:2.7.7.6)

Orthology K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]

Pathway sso00230 Purine metabolism
sso00240 Pyrimidine metabolism
sso01100 Metabolic pathways
sso03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:sso00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:sso00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:sso03020]

SSDB

Motif Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
RNA_pol_Rpb1_5 zf-FPG_IleRS

Other DBs NCBI-GI: 15897171
NCBI-GeneID: 1455376
IGM_Orsay: SSO0225
UniProt: Q980R2

Structure

PDB: 3HKZ 2PMZ

Position complement(190547..193189)

AA seq 880 aa
MSEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPT
CGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNA
IKKRWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEGVAKLTPSDI
RERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLV
DIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQ
RLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEK
LRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLIDGDIVLFN
RQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIM
LVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAIL
APREYYTGKQVISAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDK
KAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKE
IYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLD
PFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARG
FIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRS
LYGEVVQVAYGDDGVFPMYSAHGKTVDVNRIFERVVGWKA

NT seq 2643 nt +upstreamnt +downstreamnt
atgagtgaaaagaatataaaaggaataaagtttggaatactttctcctgacgaaataaga
aaaatgtcagtgactgcaataataacaccagacgtttatgatgaagacggtactccaata
gaaggaagcgtgatggatcctaggttaggtgttatagaacctggacagaaatgtccaact
tgtggtaacactttaggcaactgccctgggcactttgggcatatagaattagttagacca
gtaattcatgtaggtcttgtaaagcatatatatgagtttctaaaagccacatgtagaaga
tgtggtagggttaaaatttctgaagatgaaatagagaaatattctagaatatataatgca
ataaagaaaagatggccatcagcagctaggaggttaactgagtacgtaaagaagactgca
atgaaagctcaagtttgtccacactgtaatgaaaagcagtacaagataaagttggagaaa
ccatataatttctatgaggagaggaaagaaggtgtagctaaattaactccttccgacata
agagaaagattggaaaaaataccagattccgatgttgaaatactaggttatgatcctaca
accagtaggccagaatggatgatattaactgttcttccggttcctccaattacaattaga
ccttctattatgatagagagcggtataagagctgaagatgacttaactcataagttagtt
gatatagttagaattaatgaacgattgaaagagagtatagatgcgggagctccacagcta
ataatagaagatttatgggaccttttacagtatcatgttgcgacttactttgataacgag
attccgggattgcctccctctaaacatagatcagggagaccattaagaacattagcacag
agattaaaggggaaggaaggtagatttagaggtaatttatctggtaaaagagttgacttc
tcatctagaacagtcatatccccagaccctaatattagcatagacgaagtaggggttcca
gaaattatagctaaaacacttacagttccggaaagaataaccccatggaatatagaaaaa
ttaaggcagttcgttataaatggacccgataaatggcctggtgccaattacgtaattaga
ccagacggtagaagaattgatttaaggtatgttaaagataggaaggaactcgcatcaact
ttagctcctggatatataatcgagcgtcatctaattgatggagatatagtattatttaat
agacaaccttctcttcacagaatttcaatgatggctcatagggttagagtactaaaaggg
cttacatttaggttgaacttgctcgtatgtcctccatataacgccgatttcgatggggac
gaaatgaacttgcatgttccacagtcagaagaagcaatagctgaagccaaggagataatg
cttgtacataaaaacataataaccccaagatacggtggccctattataggagctgctcaa
gattatataagtggtgcttatctactaacagtaaaaactacgttattaactaaagaagaa
gcccagcaaatattgggtgtggcagacgttaaaattgatcttggggaaccggcaatttta
gcacctagggagtattacactggtaaacaagtaataagtgcttttctccctaaagatttt
aatttccacggtcaagctaacgttagtagtggccctaggctgtgcaagaacgaagattgt
ccacacgattcgtatgtagtgattaagaacggaatactattagaaggtgtatttgataaa
aaggctataggaaaccagcaaccagaaagtatcctccattggctgattaaggagtattct
gatgaatatggtaagtggttaatggataacctatttagagtatttattagatttgtcgaa
ttgcaagggtttacaatgagacttgaagatgtatctttaggagatgatgtaaagaaagaa
atttacaacgaaatagatagggctaaagtagaagtcgataatctaatacagaagtataaa
aatggagagttagaaccaataccgggaagaactttagaagagagcttagagaattacatt
cttgatacattagataagttaagaagtactgctggtgatatagcaagtaaatatttagat
ccgtttaatttcgcctatgtaatggcaaggactggagccaggggtagcgtattaaatata
acgcagatggctgctatgttaggtcaacaatcagttagaggggaaagaataaaaagaggg
tatatgactagaacattacctcactttaaaccttatgacatctcaccagaagctagaggt
ttcatttattcttcatttagaactggtctgaagccaaccgaattattcttccatgcagct
ggaggtagggaaggtctagtagatactgcagtgcgaacctcacagagtggttatatgcaa
agaagattaataaacgccttatcggacttaagggctgagtatgatgggactgtaagaagc
ttatatggcgaagttgttcaagtagcgtatggtgatgatggtgtatttcccatgtattca
gctcatggtaaaacggtagatgtaaatagaatctttgagagagtcgtggggtggaaggca
tga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   IGM_ORSAY-SSO (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (6)   
   Pfam (6)   
All databases (23)

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