KEGG S.solfataricus: SSO0227

Sulfolobus solfataricus: SSO0227

Entry

SSO0227 CDS S.solfataricus

Gene name rpoB1

Definition DNA-directed RNA polymerase subunit B' (EC:2.7.7.6)

Orthology K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]

Pathway sso00230 Purine metabolism
sso00240 Pyrimidine metabolism
sso01100 Metabolic pathways
sso03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:sso00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:sso00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:sso03020]

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 15897172
NCBI-GeneID: 1455377
IGM_Orsay: SSO0227
UniProt: Q980R1

Structure

PDB: 3HKZ 2PMZ

Position complement(193195..195144)

AA seq 649 aa
MLYGINERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDGGE
LANKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTIEDIE
KLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAILGITASII
PYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTN
RPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVM
PEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDT
SIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQV
DMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQN
EILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQ
PTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKN
KYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDKVGLSGG

NT seq 1950 nt +upstreamnt +downstreamnt
ttgctgtacggaataaatgagaggattgtagaaaaaacactttatgaaatgggagtagtt
ccagtggaggaggtcataagaagagtaacggaaggcggagaggatcagaatgagtatctg
aaatggtctaaggttatactcaatggaagattaataggctattatcaagatggtggagaa
ttagctaataagataagagaaagaaggagaaaaggagaaattagtgatgaagtaaacgta
ggccatatagtgacagattttattaatgaggttcatgttaattgtgattctggaagagtt
agaagaccacttataattgtttctaacggtaacccgttggtaactattgaagacattgaa
aagttagaatcaggtgctattacatttgacgatcttgttagacaaggaaagatagagtat
ctagatgcagaagaagaggagaacgcttatgttgctttagaacctaatgacttaactcca
gatcatactcatttagaaatatggtctccagctattttaggcataacagcgtctataata
ccatatccagagcataatcaatcacctagaaatacataccaatcagctatggcgaaacaa
gctctaggtctatatgcagcaaattatcaattacgtacggacacgagagcacatttactt
cattatccacaaagacctctagttcaaactagggcattagatattataggatatacaaat
aggccggccggaaataatgctatattagccgtaatgtcatttactggctacaatatggaa
gattcaataattatgaatagatcctccgtggagaggggaatgtatagatctacatttttt
aggctttactcaacggaagaggtaaaataccctggaggtcaagaagataaaatagtaatg
ccagaagctggtgttagaggatataagggcaaagaatattacagacttctagaggataac
ggagtagtctctccagaggtcgaagtgaagggaggagatgttttaataggtaaagttagc
cctccaagattcttacaagaatttaaagaattatctccagagcaagctaagcgtgacacc
tcaatagttacaagacatggtgaaatgggtatagtggatttagttctaattaccgaaact
gctgagggtaataagctagttaaggtaagagtaagagatcttaggataccaacaattggc
gataaattcgccagtagacatggacaaaaaggcgttataggtatgctcataccacaagtt
gacatgccatataccgttaaaggcgttgtgccagatataatattaaatcctcatgcattg
ccatctagaatgacgttaggacaaattatggaaggaatagctggtaaatatgcagcatta
tccggaaatattgtagatgctacacctttctacaagacacctatagaacaattacaaaat
gagattttgagatacggttatctaccagatgctactgaagtagtgtatgatggacgtact
ggacagaaaattaaatctagaatatactttggagtagtctattatcagaaattgcatcac
atggtagcagataagcttcatgctagagctaggggtccagtccaaattttaactagacaa
ccaacagaaggaagagctagagaaggtggtttaagatttggagaaatggagagagattgc
ttaattggttttggtactgcaatgcttcttaaagacaggttattggataactctgatagg
acaatgatttacgtttgtgatcagtgtggttatataggctggtacgataagaataagaat
aaatatgtatgcccaatacatggtgataagagtaacttgttcccagttactgtatcttac
gcatttaagcttttaattcaagaactaatgagtatgattatctcacctaggttagttttg
gaggataaagttggattaagtggaggttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   IGM_ORSAY-SSO (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (5)   
   Pfam (4)   
   PROSITE (1)   
All databases (22)

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