KEGG T01622: SLG

Sphingobium sp. SYK-6: SLG_00380

Entry

SLG_00380 CDS T01622

Gene name

dapE

Definition

succinyl-diaminopimelate desuccinylase

Orthology

K01439

succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]

Organism

ssy Sphingobium sp. SYK-6

Pathway

ssy00300	Lysine biosynthesis
ssy01100	Metabolic pathways
ssy01120	Microbial metabolism in diverse environments
ssy01230	Biosynthesis of amino acids

Module

ssy_M00016

Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

Class

Metabolism; Amino acid metabolism; Lysine biosynthesis [PATH:ssy00300]

SSDB

Motif

Pfam:

Peptidase_M20 M20_dimer

Other DBs

NCBI-GI:

NCBI-GeneID:

NITE:

UniProt:

Position

34132..35280

AA seq 382 aa
MTPALTDPVALAEKLIACPSVTPATGAVFDCLEAMLRPLGFTVERFVDGDEAEGGPVENL
LAVRRSGDGPHFAFAGHLDVVPPGEGWTSDAFLPERRGDLLHGRGAVDMKGAIAAFVAAV
ARTPNAGGTISLLITGDEEGEAVHGTRALMRHMAARAVVPDLCLVGEPTSVGRLGDTIKI
GRRGSVNMWITVPGVQGHVAYPHLADNPIPRLIRILSAIEAIELDEGTDWFQPSNIEITD
LHVGNPATNVIPARAAARLSIRFNDLHRGEALVSRIAALVEAEGGTLQAKISGEAFLTPP
GPLSTLVSDAITAETGLVPELSTSGGTSDARFLSALCPVVEFGLLNATMHKLDEAVALPD
LEGLTRIYMRVLAAALSPAAAG

NT seq 1149 nt +upstreamnt +downstreamnt
atgacacccgctctcaccgatcccgtcgcgctggccgaaaagctgatcgcctgcccctcc
gtcacacccgccaccggcgcggtgttcgactgcctcgaggcgatgctgcggccgctgggc
ttcacggtcgagcgcttcgtcgatggcgacgaggcggaaggcgggccggtcgagaatctg
ctggccgtacgccgatcgggtgacgggccgcatttcgctttcgccggtcatctcgacgtg
gtgccgcccggcgagggctggacaagcgatgccttcctgcccgagcggcggggcgacctg
ctccacgggcgcggcgcggtggacatgaaaggggccatcgccgctttcgtcgccgccgtg
gcgcgcacgccgaacgctggcggcacgatcagcctgctcatcaccggcgacgaggaaggc
gaggcggtccacggcacccgcgcgctcatgcgccacatggccgcgcgggccgtggtgccg
gacctctgtctcgtcggggagccgaccagcgtcgggcggctgggcgacacgatcaagatc
gggcggcgcggatcggtcaacatgtggatcaccgtgcccggcgtgcagggccatgtcgct
tatccgcatctggccgacaatccgatcccgcgcctcatccgcatcctgtcggcgatcgag
gcgatcgagctggacgagggaacggactggttccagcccagcaacatcgagattaccgat
ctgcatgtcggcaatccggccacgaatgtcattcccgcccgggcggccgcgcgcctctcc
atccgcttcaatgatctgcatcgcggcgaggcactggtgtcgcggatcgcggcgctggtg
gaggcagagggcggcacattgcaggcgaagatcagcggcgaggcgttcctgaccccgccc
ggtccgctttccacgctggtgagcgacgccatcacggccgaaaccggccttgtcccggag
ctgtccaccagcggcggcacgtccgacgcccgctttctctccgcgctgtgcccggtcgtc
gagttcggcctcctcaacgcgacgatgcacaagctggacgaagcggtggccctgccggac
cttgaaggcctcacccgcatctacatgcgcgtgctcgctgccgcgctcagcccggccgcc
gcaggatga

All links

Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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