KEGG   Sphingobium sp. SYK-6: SLG_04090
Entry
SLG_04090         CDS       T01622                                 
Name
(GenBank) pseudouridine synthase
  KO
K06179  23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Organism
ssy  Sphingobium sp. SYK-6
Brite
KEGG Orthology (KO) [BR:ssy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ssy03009]
    SLG_04090
Enzymes [BR:ssy01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.24  23S rRNA pseudouridine955/2504/2580 synthase
     SLG_04090
Ribosome biogenesis [BR:ssy03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    SLG_04090
SSDB
Motif
Pfam: PseudoU_synth_2 S4
Other DBs
NCBI-ProteinID: BAK65084
NITE: SLG_04090
UniProt: G2IKM1
Position
416613..417956
AA seq 447 aa
MSRGKAGDPAAVRQFTVAADDDGIRLDRWFKRHMPDVSFATVSRWARTGQLRVNGARATP
GDRIEEGQVLRVPPLEAAPDQKAGRTPRARPVLSEDQMAFAESLVIHRDAQALVINKPPG
LATQGGTKTHEHVDGLLDALMFERDDRPRLVHRLDKDTSGALLLARTARAAAQFAKSFSS
RTARKVYWAIVMGVPDVADGVIDLPLAKQPGTGGEKMHVDEENGMPARSRYRIIERAGNR
AAWVELQPYTGRTHQLRVHMAAIGHPIVGDGKYGGKDAFLSGSISRKMHLHARRIRIDHP
DGSPLDVRADPPAHFAETLASLGFDVAEGDLPLEVDSQPSVFEKKVAEKRAASQHAKDMR
KARRGERRSRAGGGAPGGKPGGGKPGGGKPGGGRPGGSKPGTGKPAAGRSAAGKSGGKPA
ADGRPSGGKARPRTTGAPAPGSRGKKR
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgagccggggcaaggcaggcgatccggcggccgtgcgccagttcaccgtggctgcggat
gatgacggcattcgcctcgaccgctggttcaagcgacacatgcccgatgtgtccttcgcc
acggtctcgcgctgggcgcggaccggccagttgcgcgtgaacggcgcgcgcgccacgccg
ggcgaccggatcgaggaagggcaagtgctgcgcgtgccgccgctcgaggccgcgccggac
cagaaggccggccggacgccgcgcgcccggcccgtgctgagcgaggaccagatggcgttc
gccgagagcctcgtcatccatcgcgatgcgcaggcgctcgtcatcaacaagccgcccggc
ctcgccacgcagggcggcaccaagacgcatgagcatgtcgacgggcttctcgacgcgctg
atgttcgagcgggacgaccggccacgcctcgtccaccggctggacaaggacaccagcggc
gcgctgctgctggcgcgcacggcgcgtgccgccgcgcagttcgcgaaatccttttcctcg
cgcaccgcgcgcaaggtctactgggcgatcgtgatgggcgtgcccgacgtcgcggacggc
gtcatcgacctgcctctcgccaagcagccgggcaccggcggcgagaagatgcatgtcgac
gaggagaacggcatgcccgcgcgcagccgctatcgcatcatcgagcgggcgggcaaccgc
gccgcctgggtcgagctccagccctataccgggcgcacgcaccagctgcgcgtccacatg
gcggcgatcggccatcccattgtgggcgacgggaaatatggcggcaaggatgccttcctg
agcggctccatcagccgcaagatgcatctgcacgcacgccgcatccgcatcgatcatccc
gacggctcgccgctggacgtgcgggcggacccgccggcccatttcgccgagacgctcgcg
agcctgggcttcgacgtcgccgagggcgacctgccgctcgaagtggatagccagccgagc
gtgttcgaaaagaaggtcgcggaaaagcgcgccgccagccagcatgccaaggacatgcgc
aaggcccggcgcggcgagcgtcgctcacgcgccggtgggggtgctccaggtggcaagccg
ggtggtggcaagccgggtggcggcaagcccggcggtggtcgacccgggggaagcaagccg
ggcacgggcaaaccggcggccggccggtcggcggctggcaaatccggtggcaagccggcc
gcggatggccgtccatcaggcggaaaggcccgaccccgcaccacgggcgcaccggccccc
ggctcacgcggaaagaagcgctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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