KEGG   Sphingobium sp. SYK-6: SLG_36010
Entry
SLG_36010         CDS       T01622                                 
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
ssy  Sphingobium sp. SYK-6
Pathway
ssy03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ssy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SLG_36010 (xthA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssy03400]
    SLG_36010 (xthA)
Enzymes [BR:ssy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     SLG_36010 (xthA)
DNA repair and recombination proteins [BR:ssy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     SLG_36010 (xthA)
SSDB
Motif
Pfam: Exo_endo_phos
Other DBs
NCBI-ProteinID: BAK68276
NITE: SLG_36010
UniProt: G2IQA2
Position
3880072..3880851
AA seq 259 aa
MRIATFNINGIRARLPRLLEWLAETQPDVACLQEIKTQDEGFPIADIEAAGYGAIWHGQK
GFNGVAILARGATPAEVTRGLDGEPEDDHSRYIEADVAGVRIASIYLPNGNPVPGPKFDY
KLRWMARLRQRAARILAEEIPAVLAGDYNVIPFDRDVWKPAAMAADALMQPESRAAYKAL
MFDGWTDALAARHPAGGVWTYWDYQAGAWPRDAGFRIDHLLLSPAAADRLVDAQVDKAYR
GREKASDHAPVWVRLKDQD
NT seq 780 nt   +upstreamnt  +downstreamnt
atgcgcatcgccactttcaacatcaacggcattcgggcacgcctgccgcgcctgctcgaa
tggctcgccgagacgcagcccgacgtcgcctgcctgcaggaaatcaagacgcaggatgag
ggcttccccatcgcggacatcgaggcggccggctatggcgccatctggcacggccagaaa
ggcttcaacggcgtcgccattctcgcgaggggagcgacacccgccgaggtaacgcgcggg
ctggacggcgagccggaggacgaccacagccgctatatcgaggccgacgtggccggcgtg
cggatcgcatccatctacctgcccaatggcaatccggtgccggggccgaaattcgattac
aagctgcggtggatggccaggctgcgtcagcgcgcggcgcggatcctcgccgaggagatc
ccggcggtgctggccggcgactataatgtcatcccgttcgaccgcgatgtctggaagcct
gccgccatggccgcagacgcgctgatgcagccggagagcagggcagcctacaaggcactc
atgttcgacggatggaccgatgcgctggccgcgcgccatccggcgggcggtgtctggacc
tactgggattatcaggccggcgcctggccacgagacgcgggctttcgcatcgaccatctg
ctgctttcgcctgccgccgcagaccggctggtcgatgcgcaagtggacaaggcctatcgc
ggccgggagaaagccagcgatcacgcgcccgtgtgggtgcgattgaaggatcaggactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system