KEGG T01672: SCc

Serratia symbiotica: SCc_429

Entry

SCc_429 CDS T01672

Gene name

rne

Definition

ribonuclease E

Orthology

K08300

ribonuclease E [EC:3.1.26.12]

Organism

ssz Serratia symbiotica

Pathway

ssz03018

RNA degradation

Class

Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:ssz03018]

SSDB

Motif

Pfam:

RNase_E_G S1 PNPase_C

Other DBs

NCBI-GI:

374314160

NCBI-GeneID:

11577007

Position

complement(946367..949462)

AA seq 1031 aa
MKRMLINATQREELRVALVDGQRLYDLDIESSGYEQKKANIYKGKITRIEPSLEAAFVDY
GVERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLCEHQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRAELKEALASLQLPYGMGLIVRTAGVGKSVDAL
QWDLSFRLKHWEAIKKAAQGRVAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILSLA
KEHISALGRPDFSSKIKLYSGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGSDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRDVE
NRLRDVVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCTRCNGTGTVRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRDSVSAIEKCQSGVKAIIVPSDQMQ
TPHYSVMRVRKGEETVTLSYLLPKLHEEVKIQPVEDVSTDRKRQESPVLEAVSLDSYDPL
LSTQEPIITTLKAATVNKPNLLSRFFSGLKKLIFTTERSLSIEVTSTKPSLVGNSNENNH
SCRHSRQSSSKKEHVGCRDKHEDYKLRDLIEAPCNDQQKNELVVKKLLSDDTADVAHPML
NEQEHGEKSIEYQRRRQEGKHQFSQGEKLLKGSVIGNNEVLEDKPRTQSMQRRQRRPITQ
NILLFSTEEELDHAAEDLLAPKEIIAKFEDSEHSNITDNIKLLPKIMNAENNAQCDNRSN
NENGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPLATAFASPELASGKVWISYPVV
QVTQSKETKTHASVNNTAQGSMMTSVDVTVSIINSVIKPQIINVAEVASEQIVASIVQST
TVSMITDEITASKAACVAIPALEPIITNKTSQVKQERLMPAFAISAITEPVLILSQKPKV
KLVPNTPQKHIASAPMTKVPALTYASAEHDQKDWHCRPSFSFTGKGSAGGHAAVNQSMSP
TAKPQPLNDEI

NT seq 3096 nt +upstreamnt +downstreamnt
atgaaaagaatgttaattaatgccactcagcgggaagagttgcgtgttgcgcttgtagac
ggacaacggctatatgacttggatatcgagagttcaggttatgaacaaaaaaaagctaat
atttataaaggtaaaatcactcgtattgagccaagtcttgaagcagcatttgtggattac
ggtgtagagcgtcacggctttttaccattgaaagagattgctcgtgaatattttcctagc
aattattcttctcatggtcgtcctaatatcaaagatgtgttgtgcgaacatcaagaagta
atcgttcagatagataaagaagagcgcggcaataaaggcgcggccttaacaacattcatt
agtctagcaggtagttatctagtactcatgccaaataacccacgtgcgggtggtatttcc
cgtcgtattgaaggtgatgaccgtgctgaactaaaagaggcacttgcttctctacagctt
ccgtatggtatggggctcatagttcgcactgcaggtgttggtaagtctgtagatgcttta
caatgggatttatccttccgtttaaagcattgggaagcgattaagaaagctgctcaaggc
agagttgcgccgtttttaattcatcaggaaagtaatgtaattgtaagagcatttcgtgat
tacttgcggccggacattggagagatattaatagataatccaaaaattctcagtttagct
aaagagcatatctcggcgcttggtcgtccggattttagtagtaaaataaagttatatagt
ggtgatattcctttatttagtcactaccaaattgaatcacaaattgaatcagcttttcaa
cgagaagtgcgtctaccctccggtggttcaatagttattgatagtacagaagcattaact
gccattgacattaattctgctcgtgctactcgtggtagtgatattgaagaaactgcattt
aatactaatttggaagcagcggacgaaattgctcgtcaattacgtttacgtgacctcggt
ggattaatcgttattgattttattgatatgacgccagtgcgtcatcaacgtgacgttgaa
aatcgcttgcgtgacgtagtacgccaagatcgtgcacgtattcagattggccgtatttct
cgttttggtttgcttgaaatgtcgcgccaacgccttagtccatcacttggcgaatccagt
catcacgtctgtacgcgctgtaatggtactggcactgtccgtgacaacgaatcattagcc
ctatctattctacgtttaattgaagaagaggctttaaaggaaaatactaaagaagtccat
gctattgtaccggttcaggtcgcttcttatttattaaatgaaaagcgtgattctgtcagt
gcgattgaaaaatgtcagtctggtgtaaaggctattattgttccaagtgaccaaatgcag
acgcctcattactctgtaatgcgtgtgcgtaagggtgaggaaactgtcactcttagttat
ttactgcctaaattacatgaagaggtaaagatacaaccagttgaagatgtatcgactgat
cgcaagcgtcaggagtcgccggtactagaggctgtgtcattagattcttatgacccgtta
ttatctactcaagagcctatcattactacattaaaagctgctactgttaataaaccaaat
ctattaagtcgattttttagtggcttaaaaaagttaatatttactacagagagatcactt
tctatcgaggtaacatctactaaaccttcgctggtaggaaatagtaatgaaaataatcat
tcgtgtcgccacagtcgacaatcttctagtaaaaaagaacatgttgggtgtcgtgataag
cacgaagattataaactacgcgatctcattgaagcgccgtgtaatgatcaacagaaaaat
gaattagttgttaaaaaacttttatcagatgatactgctgatgttgcgcatcccatgctt
aatgagcaagagcacggtgaaaaaagtatagaatatcagcgccgccgtcaagaagggaag
caccagttctctcagggagaaaaattgttgaagggctcagttattggtaataatgaagtg
ctagaagataaacctaggacgcaaagtatgcagcgacgtcaacgacgtccaatcacgcaa
aacatcctgctattctctactgaagaggaattagatcatgccgcagaagatttacttgcg
ccgaaagaaatcatcgctaaatttgaagactctgagcattcaaatataacggataatatt
aaattattacctaaaattatgaatgctgaaaataatgcgcaatgtgataatcgtagtaat
aatgaaaacggtatgccacgtcgctcacgtcgttctccgagacatttacgtgttagtggc
cagcgtcgccggcgttatcgtgatgaacgctaccctgtacaatctcctatgccgttagct
acagcttttgcctcaccagagttagcgtcagggaaagtttggatatcttacccggttgtt
caggtaacacaatcgaaagaaactaaaactcatgctagtgtaaacaatactgctcaaggt
agtatgatgacatcagtagatgttacagtttctatcattaattctgtcattaaaccgcaa
ataattaatgttgcggaagttgcttctgagcaaatagtcgcatctatagtgcagtcaact
acagtttctatgattacagatgaaattacggcttctaaggcagcgtgtgtagcaatacca
gcattagagccaataattactaataaaacatctcaagtaaagcaagaaagactaatgcca
gcgtttgcgatttcagctattacagaacctgtattaatattatcacagaagcctaaagta
aagcttgtgccaaatacaccacaaaaacatattgcaagcgcgccaatgactaaagtgcct
gcactaacttatgcttcagcagaacacgaccaaaaagattggcactgccgcccttctttt
agctttacaggaaaaggctctgctggtggccatgctgcagtaaatcaatctatgtcacca
actgctaaaccgcagccacttaatgatgaaatctag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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