KEGG T05384: CLM74

Stenotrophomonas sp. MYb57: CLM74_00020

Entry

CLM74_00020       CDS       T05384

Symbol

gyrB

Name

(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

stem Stenotrophomonas sp. MYb57

Brite

KEGG Orthology (KO) [BR:stem00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:stem03032]
    CLM74_00020 (gyrB)
   03400 DNA repair and recombination proteins [BR:stem03400]
    CLM74_00020 (gyrB)
Enzymes [BR:stem01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     CLM74_00020 (gyrB)
DNA replication proteins [BR:stem03032]
Prokaryotic type
  DNA Topoisomerases
   CLM74_00020 (gyrB)
DNA repair and recombination proteins [BR:stem03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CLM74_00020 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook Toprim_4 HATPase_c_3

Other DBs

NCBI-ProteinID:

AVJ31279

Position

4848..7307

AA seq 819 aa
MTDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA
LAGHADHVSVTIHADGSVGVSDNGRGIPTGKHEQMSKKLDRDVSAAEVVMTVLHAGGKFD
DNSYKVSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPSTKRGT
TLRFWPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGDGRRDDFHYEGGIRS
FVEHLAQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAG
FRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSD
VRPAVESAFGQRLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLP
GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLAS
DQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIER
GYVYIGLPPLYKIKQGKQELYLKDDPALDSYLASSAVENAGLVPASGEPPIDGLALEKLL
LAYAAAQDTINRNTHRYDRNLLEALVDFMPLELENLRNAGPGEGLDALAKHLNQGNLGSA
RFTLELQEPNEQRPAAVLVTRSHMGEQHIQVLPLSALESGELRGIHQAAQLLHGLVREGA
VITRGAKSIEVESFAQARNWLLDEAKRGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQV
RIEDAVAADQIFSTLMGDVVEPRRDFIEDNALKVANLDI

NT seq 2460 nt +upstreamnt +downstreamnt
atgaccgacgaacagaacaccccggcaaacaacggcaactacgacgccaacagcattacg
gccctggaaggcctggaggctgtccgcaagcgcccaggtatgtacatcggcgacgtccat
gacggcaccggcctgcatcacatggtgttcgaggtcgtcgacaactcgatcgacgaagcc
ctcgccggccatgccgaccacgtgtcggtgacgatccatgccgacggctcggtcggagtg
tccgacaacggtcgcggcattccgacgggcaagcacgagcagatgagcaagaagctcgac
cgcgacgtgtctgcagccgaagtcgtgatgacggtcctgcacgcaggcggcaagttcgac
gacaacagctacaaggtttccggcggcctgcacggcgtgggcgtcagcgtggtcaacgcg
ctgtcgcagaagctggtcctggatatctaccagggcggtttccactaccagcaggaatac
gccgacggcgcagcactgcatccgctcaagcaggtcggtcccagcaccaagcgcggtacc
accctgcgcttctggccgtcagtaaaggctttccacgacaacgtggaattccactacgac
atcctggcccgtcgcctgcgcgaactgtccttcctcaattccggcgtcaagatcgtgctg
gtggacgagcgtggtgatggccgccgcgacgacttccattacgagggcggcatccgcagc
ttcgtggagcatctggcgcagttgaagacgccgttgcacccgaacgtgatctcggtaacc
ggcgaatccaacggcatcaccgtggaagtggcgctgcagtggaccgactcctaccaggag
acgatgtactgcttcaccaacaacattccgcagaaagacggcggtacccacctggccggc
ttccgtggcgcgttgacccgcgtgctcaacaactacatcgagcagaacggcatcgccaag
caggccaagatcaacctgaccggcgatgacatgcgcgaaggcatgatcgcggtgctgtcg
gtgaaggtgccggacccgagcttctccagccagaccaaggaaaagctggtcagctcggat
gtgcgtccggccgtggaaagcgcattcggccagcgcctggaagagttcctgcaggaaaac
ccgaacgaagccaaggccatcgccggcaagatcgtcgacgctgcccgtgcccgcgaagcc
gcgcgcaaggcccgcgacctgacccgccgcaagggtgcgctggatatcgccggcctgccg
ggcaagctggccgactgccaggaaaaggatccggcgctgtccgaactgttcattgtcgag
ggtgactcggcaggtggttcggccaagcagggccgcaaccgcaagaaccaggcggtgctg
ccgctgcgcggcaagatcctcaacgtggaacgtgcacgcttcgaccgcatgctggcgtcc
gaccaggtgggtacgctgatcaccgcgctgggcaccggcatcggtcgcgacgagtacaac
ccggacaagctgcgttaccacaagatcatcatcatgaccgacgccgacgtcgacggcgcg
cacatccgcaccctgctgctgacgttcttctaccgtcagatgccggagctgatcgagcgt
ggttatgtctatatcggcctgccgccgttgtacaagatcaagcagggcaagcaggagctg
tacctgaaggacgatccggcgctggacagctatctggccagcagcgcagtggagaacgcg
gggctggtgccggccagcggcgagccgccgatcgatggcctggcgctggaaaagctgctg
ctcgcctacgctgccgcgcaggacacgatcaaccgcaatacccatcgttacgaccgcaac
ctgctcgaagcgctggtcgacttcatgccgttggagctggaaaacctgcgcaacgcaggt
cccggcgaaggcttggacgcgctggccaagcacctcaaccagggcaacctcggcagcgcc
cgtttcaccctggaactgcaggaacccaacgagcagcgtccggctgcggtgctggtcacg
cgcagccacatgggcgaacagcacatccaggtgctgccgctgtccgcgcttgaaagcggt
gagctgcgtggcatccaccaggcagcgcagctgctgcacggtctggtccgcgaaggcgcg
gtcatcacccgtggcgccaagtcgatcgaggtcgaatcgttcgcgcaggcccgcaactgg
ctgctggacgaagccaagcgcggccgtcagatccagcgattcaagggtctgggcgaaatg
aatccggaacagctgtgggacaccaccgtcaatcccgatacccgtcgcctgctgcaggtg
cgtatcgaagatgcggtggccgctgaccagatcttcagcaccctgatgggtgatgtggtc
gaaccgcgccgcgactttatcgaagacaacgcgctgaaggtcgccaacctggatatctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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