KEGG   Sphingopyxis terrae: AOA14_00110
Entry
AOA14_00110       CDS       T04307                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
ster  Sphingopyxis terrae
Pathway
ster03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ster00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AOA14_00110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ster03400]
    AOA14_00110
DNA repair and recombination proteins [BR:ster03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AOA14_00110
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AOA14_00110
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 UB2H AAA_16 DUF87 SWI2_SNF2 AAA_33 Kinesin DUF2963 AAA_22 FATC AAA Microtub_bd
Other DBs
NCBI-ProteinID: AMU93013
UniProt: A0A142VT98
Position
21074..23260
AA seq 728 aa
MAIQIRTSLDEIDTAQDYVPHRPARPDKVEGGKRFELVSDYSPAGDQPTAIRELVDTARE
GERDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQVVDSGEIIRKLVALQYKRNDQAFARGNFRVRGDSLEIFPSHYEDM
AWRVSFFGDEIEEITEFDPLTGKKIASLNYVRVYANSHYVTPGPTLKQATEAIRHELAER
LKELETEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFAEWDMMRPQTV
SVSATPGTWEMDRTQGVFAEQVIRPTGLIDPPVEIKPVEEQVDDLIAEAKKTAAAGYRTL
VTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLERIEIIRDLRLGVFDVLVGINLLREGL
DIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERALRETDR
RRAKQQAYNEEHGITPTTIKRNIGDIIAHVASKDQVTIDLGDDKPQHMVGHNLRAYIQEL
EKKMRDAAADLEFEEAGRLRDEIRRLEADELGLPADEQVAPRVGRSNEGKPGTRKGRFGK
QSKTKWGR
NT seq 2187 nt   +upstreamnt  +downstreamnt
atggcaattcagattcgcacctcgctcgacgaaatcgacacggcgcaggactatgtgccg
caccgtcccgcccgccccgacaaggtggagggcggcaagcggttcgaactggtcagcgac
tattccccggcgggcgatcagccgaccgcgatccgcgagctggtcgataccgccagggag
ggcgagcgcgatcaggtgctgctcggcgtcacgggatcgggcaagaccttcaccatggcg
aaggtgatcgaggagttgcagcgcccggcgctgatcctcgcgcccaacaagatcctcgcg
gcgcagctctatggcgagttcaagagcttctttccgaacaatgcggtcgaatatttcgtc
agctattacgactattaccagcccgaggcatatgtgccgcggtccgacacctatatcgag
aaggaaagcagcgtaaacgaggcgatcgaccgcatgcgccactcggcgacgcgcgcgctg
ctcgaacgcgacgacgtcatcatcgtcgcctcggtatcgtgcctttacggcatcggatcg
gtcgagacttattcggcgatgatcttcgatttgaagaaggggcaggtcgtcgacagcgga
gagattatccgcaagctcgtcgcgctccagtacaagcgcaacgaccaggcgttcgcgcgc
ggcaatttccgcgtccggggcgacagcctcgaaattttcccatcgcactatgaggacatg
gcgtggcgcgtcagcttcttcggtgacgagatcgaggagatcaccgaattcgatccgctg
accggcaagaagatcgccagcctcaactatgtgcgcgtctatgccaacagccactatgta
acacccggtccaacgctgaagcaggcgaccgaagcgatccgccacgaactcgccgagcgg
ctgaaggaactcgaaaccgagggccggctgctcgaagcgcagcggctcgaacagcggaca
aatttcgacctcgaaatgatagccgcgaccggaagctgtgcagggatcgaaaattacagc
cgcttcctgaccggccgcctgccgggcgagccgccgccgaccttgttcgaatatctgccc
gacaatgccttgctgttcgtcgatgaaagccaccagacgattccgcagatcggcgcgatg
tcaaagggcgaccatcgccgcaagatcactctcgccgaatatggctttcggctgccgtcc
tgcatcgacaaccggcccttgcgcttcgccgaatgggacatgatgcggccccagacggtc
agcgtgtcggcaaccccggggacgtgggaaatggaccgcacccagggcgttttcgccgag
caggtgatccgcccgaccgggctgatcgatccgccggtcgagatcaagccggtcgaggag
caggtcgacgatctgatcgccgaggcgaagaaaactgccgcggcgggctatcgcaccctc
gtcactacgctcaccaagcgcatggccgaggatctgaccgagttcctccacgaagcggga
ctgaaggtccgctacatgcacagcgacgtcgaaacgctcgagcgcatcgagatcattcgc
gacctcaggctcggcgtgttcgacgtgctcgtcggcatcaacctcttgcgcgaaggcctc
gacattcccgaatgcgggctcgtcgcgatcctcgacgccgacaaggaggggttcctgcgc
agcgaaaccagcctcgttcagacgatcggccgcgccgcgcgcaacgtcgatggccgcgtc
atcctctatgccgaccgcatcaccggcagcatggaacgcgcgctgcgcgaaaccgaccgc
cgccgcgccaagcaacaggcgtataacgaagaacacggcatcacgccgacgacgatcaag
cgcaacatcggcgacatcatcgcgcatgtcgcgtcgaaggatcaggtcaccatcgacctc
ggcgacgacaagccgcagcacatggtcggccacaacctccgcgcctatatccaggagctg
gaaaagaagatgcgcgacgccgccgccgacctggaattcgaggaagccggtcgcctgcgc
gacgaaatccgccgcctcgaagccgacgaactcggcctgcccgcggacgaacaggtcgcc
ccgcgcgtcggccgctcgaacgagggcaagccgggtacgcgcaaggggcgcttcgggaag
cagagcaagacgaagtgggggcgttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (26)   

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