KEGG   Sphingopyxis terrae: AOA14_00325
Entry
AOA14_00325       CDS       T04307                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ster  Sphingopyxis terrae
Pathway
ster03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ster00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AOA14_00325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ster03400]
    AOA14_00325
Enzymes [BR:ster01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AOA14_00325
DNA repair and recombination proteins [BR:ster03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AOA14_00325
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H RecG_dom3_C
Other DBs
NCBI-ProteinID: AMU93056
UniProt: A0A142VTE1
Position
63855..67349
AA seq 1164 aa
MTRPSADIFAAITSASAPLTLARTADGFLPLLLADLARTSDKRLVYVATDDTAMQAVADA
APFFAPDLVIHRFPAWDCLPYDRAGPSMRVSADRLATLSALQAPPKRGELILTTVAAIAQ
RTLTPFRIRQLATTLAPGQRIDRDALAELLVANGFNRVDTVADQGEFAVRGSLVDLFPAG
EDAGLRVDFFGDEIESIRRFDPADQRSLGPAKSLQLLPAAETLLDQDTIKRFRSSYREMF
GAQATGDPLYQAVSEGRRQAGMDHWLPLFEERLATLFDHIDPATPVLRGHRTDATAETRF
DAITDYHANRVAAEREQAGSYRPLAPDTLYLTSSEWAAAERDRPVHVVSPFDVPPAPNVI
DLESFAARDFTPERAADLNVYDKVADHLSDERRKGRRTIIASYSVGARDRLSGLLRDHGV
SALASADGWQEALGTASADAGGATAMVVLPLDHGFASDAISLLTEQDILGERLVRRQKRR
KSADAFLAELATLSVGDLVVHLDHGIGRYEGLTSIPVGKSPHDCVALTYAGGDKLYVPVE
NLDVLSRYGGESDGVALDKLGGEAWQRRKARMKERIREIAGELLATAAQRALRPGEVLAQ
DAAYPAFADRFPYQETDDQDRAIGDVLEDMASGRPMDRLVCGDVGFGKTEVALRAAFVAA
MAGVQVAVVVPTTLLARQHYTNFVERFKGFPVNIGRLSRLVPAGEAQKTRDGLASGQIDI
VVGTHAVIAKSVEFRNLGLVIVDEEQRFGVVHKERLKQLKADVHVLTLTATPIPRTLQMA
MSGLRELSVIQTPPVDRLAVRTYVAPWDPVVIREALLREHDRGGQSFFVTPRIKDLPDIE
EFLRTRVPEIKYVVAHGQMAPGEVEERMSAFYDRKYDVLVSTTIVESGLDIPSANTLIVH
RADRFGLAQLYQLRGRVGRSKTRAYAYLTTPEGGAITDTAEKRLKLLGDLDTLGAGFQLA
SHDLDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILVAKAEGAGVAPPREALSPVITV
DAPILIPEDYVPDLPLRMALYRRLNEAEDRTGLDGFAAEMIDRFGPLPPETANLIQLMEI
KANARAAGIAKLDVGTKGALVSFHGDQFANVPGLIAYVERLKGRARIRPDNKLSVSGDWI
SAGARLNGALQLSKGLGKLARQAS
NT seq 3495 nt   +upstreamnt  +downstreamnt
atgacccgtccctccgccgacattttcgccgccatcacgtcggcgtcggcaccgctgacg
ctcgcgcgcaccgcggacggcttcctgccgctgttgctcgccgatctggcgcgcaccagc
gacaagcggctcgtctatgtcgcgaccgacgataccgcgatgcaggcggtcgccgatgcc
gcgcctttctttgcgcccgaccttgtcatccatcgctttcccgcctgggactgcctgccc
tatgaccgcgccgggccgtcgatgcgcgtcagcgccgaccggctcgccacgctgtcggcg
ctgcaggcgccgccgaagcgcggcgaactgatcctgaccaccgtcgccgcgatcgcccag
cgcaccctcacgcccttccgcatccgccagctcgcgaccacgctcgcaccggggcagcgg
atcgatcgcgacgcgcttgccgaactgctcgtcgccaacgggttcaaccgcgtcgatacc
gtcgccgatcagggcgaattcgcggtgcgcggcagcctcgtcgaccttttccccgccggc
gaggacgcggggctgcgcgtcgacttctttggcgacgagatcgagagtattcgccgcttc
gatcccgccgaccagcgcagtcttggccccgccaagtcgctgcaactgcttcctgcggcc
gaaacgctgctcgatcaggacacgatcaagcgcttccggtcgagctaccgcgagatgttc
ggcgcgcaggcaaccggcgatccgctctatcaggcggtcagcgagggccggcggcaggcg
gggatggaccattggctgccgctgttcgaggaacggctggcgacactgttcgaccatatc
gaccccgcaaccccggtgctgcgcggccaccgcaccgacgcgacggcggagacgcgcttc
gatgcgatcaccgactatcatgcaaaccgcgtcgcggccgagcgcgagcaggcgggcagc
tatcgcccgctcgcccccgacacgctttacctgacctcgagcgagtgggcggctgccgag
cgcgaccggccggtgcatgtcgtctcccccttcgatgtcccgcccgcgccgaacgtcatc
gatctcgaaagctttgccgcccgcgatttcacgcccgagcgcgcggcggacctcaacgtc
tatgacaaggtcgccgaccatctgtcggacgaacgccgcaagggccgccggacgattatc
gccagctattcggtgggcgcgcgcgatcgcttgtcggggctgctcagggaccatggcgtc
agcgcgcttgcctccgccgacggctggcaggaagcactcggcaccgcttcggccgatgcc
ggcggcgcgaccgcaatggtcgttcttccgctcgaccacggcttcgcgagcgacgcgatc
agcctgctcaccgagcaggatattctcggcgaaaggctggtacgtcgtcaaaagcgccgc
aaaagcgccgacgccttcctcgccgaactcgcgacgctcagcgtcggcgatctcgtcgtc
cacctcgatcatggcatcggccgctacgaagggctgacgtcgatcccggtcgggaaaagc
ccgcacgattgcgtcgcgctcacttatgcgggcggcgacaagctctacgtccccgttgaa
aatctggacgtcctctcgcgctacggaggcgagagcgacggggttgcgctcgacaagctc
ggcggcgaggcatggcagcgccgcaaggcgcggatgaaagagcgcatccgcgaaatcgct
ggcgaactgctcgcgaccgcggcgcaacgcgcgctccgccccggcgaagtgctggcgcag
gacgccgcttatcccgctttcgccgaccgtttcccctaccaggaaaccgacgatcaggac
cgcgcgatcggcgacgtgctggaggatatggcgtcgggccgcccgatggaccggctcgtc
tgcggcgacgtcggtttcggcaagaccgaggttgcgctccgcgccgccttcgtcgcggcg
atggcgggggtgcaggtcgcggtggtcgtgccgacgaccttactcgcgcgccagcattac
acgaacttcgtcgagcgtttcaaaggcttcccggtcaacatcggccgcctgtcgcgtctc
gtgcccgcgggcgaagcgcagaaaacgcgcgacggcctcgccagcgggcaaatcgatatc
gtcgtaggcacccacgcggtgatcgcgaaatcggtggaattccgtaatctcggcctcgtc
atcgtcgacgaggagcagcgtttcggcgtcgtccacaaggaacggctgaagcagctcaag
gccgacgtccatgtgctgacgctgacggcgacgccgatcccgcgcaccttgcagatggcg
atgtcggggctgcgcgaactcagcgtcatccagacgcccccggtcgaccgtctggcggta
cgcacctatgtcgcgccgtgggatccggtggtgatccgcgaagcgctgctgcgcgagcat
gaccgtggcggccaaagcttcttcgtcaccccgcgcatcaaggatctgcccgacatcgag
gagttcctgcgcacccgcgtccccgaaatcaaatatgtcgtcgcgcacggccagatggcg
cccggcgaagtcgaagagcgcatgagcgccttctacgatcgcaaatatgacgtgctcgta
tcgaccacgatcgtcgaaagcggcctcgacattccgagcgccaacaccttgatcgtgcac
cgcgccgaccgtttcggcctggcccagctttaccagctccgcggccgcgtcggccggtcg
aagacgcgcgcctacgcgtacctcacgacgcccgagggcggcgcgatcaccgacaccgcc
gaaaagcggctcaagctgctcggcgatctcgacaccttgggggctggcttccagcttgcc
agtcacgacctcgacattcgcggcgccggcaatctcgtcggcgacgaacagtcgggacat
attcgcgaggtcggattcgaactctatcaatcgatgctcgaagaggcgatcctcgtcgcc
aaggccgaaggtgctggcgtcgcaccgccgcgcgaggccttgtcgcccgttatcacggtc
gatgcgccgatccttatccctgaagattatgtacccgacctgccgctacgcatggcgctc
tatcgccgcctcaacgaggccgaggaccgtaccgggctcgacggtttcgcggccgagatg
atcgaccgcttcggcccgctgccgcccgaaaccgcgaacctcatccagctcatggagatc
aaggcgaacgcgagggcggctggcatcgccaagctcgacgtcggcaccaagggcgccctc
gtcagcttccacggcgaccagttcgccaatgtccccggtctgatcgcctatgtcgagcgg
ctgaagggtcgcgcgcgcatccggcccgacaacaagctgtcggtgagcggagactggatc
agcgcgggcgcgcggctcaacggcgcactgcaactgtcgaaaggtttggggaaactcgca
cggcaggcgagctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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