KEGG S.thermophilum: STH1885

Symbiobacterium thermophilum: STH1885

Entry

STH1885 CDS S.thermophilum

Gene name dnaE2

Definition DNA polymerase III alpha subunit

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway sth00230 Purine metabolism
sth00240 Pyrimidine metabolism
sth01100 Metabolic pathways
sth03030 DNA replication
sth03430 Mismatch repair
sth03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:sth00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:sth00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:sth03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:sth03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:sth03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha PHP tRNA_anti

Other DBs NCBI-GI: 51893023
NCBI-GeneID: 2980226
UniProt: Q67N73

Position complement(2026006..2029263)

AA seq 1085 aa
MSFVHLHVHSPFSFLDGASRLDDLIAEAALHGMPALALTDHNNVSGAVRFQRKAQEAGIQ
PIQGAELTLEGGYHLTLLATGPKGYANLNRLITAAHLGQEPRATPGAMFALAPGHDRLQP
ACPLSALSHDTDGLIALSGCRRGEIPSLILRGRLAEAEAAARRYAAWFPGRFYLELHDER
LPGEQALNRALRDLGEALGLPLVVTSNVHHRTREEFFVHDLLTCVRTLTRIDQPHPERPL
NDQRYLKPPEVMIERFREFPEAVKNTLAIAERCRPVLDLDARLHPEFQTPDGSHPAAYLT
HLVYDGAARRYGRITERIRRRLEHELTIITRLGYEDYFLLVWDVVRFARERGIRCAGRGS
AADSAVAYCLFITDVDAIERGLLFERFMSLERAQKPDIDIDFDARRRDEVAAYVYRKYGA
DHVASVCTYNTFQARSAVRDLGKAMGFQEADLDYLAKRIPWHAGADEILTVMARYPELRQ
SGIPWHKFEQLVQAAERVARFPRFIGTHLGGLVISRRPLLEVTPLQMAAKGQVVCQFDKE
YVEDLGLVKLDLLSLRTFTAVDDAVRAIGDIDYEQIPHGDAATYEMLGVGESIGVFQLES
PAQRALQARLKPDRFEDIVASVAIIRPGPIKGNMVEPFLARRHGKEEVTYLHPKLKPILE
KTYGVVLFQEQVIEIATAVAGFTPGEADQLRRVMTHARNREDMEAIGRLFRQKAAAAGVD
PAVADTIFSYIQGYASYGFCEAHAAAFANTAYKTAYLVRHYPAEYFAALMSAQPMGYYPI
NTLAVEARRRGVGLLPVDINRSEEAFTVEEWSREAWEAFWGMEPFAPEYPATGKAIRIGL
RAVKGVGEPAAAAILAARDGGEFRSLADLVRRTGGAVPRGPLEALVLAGAFDRLHSNRRA
ALWQVAHLLEAERIRQERGAGQAGLLDGDAPGLGAQAAEALEAASPQGTPAIADFGAAER
YLKEYELTGLMVRTHFMRFVRERLAREGYLTAQEVRQRRAGELVKVAGLPVCPHRPPTRS
GKIVVFLSLEDETGLIDLTIFEDVYQRYGHLIFTDPRPPLAALGRVDRRGGHVSITVNRL
RLLDT

NT seq 3258 nt +upstreamnt +downstreamnt
atgagcttcgtccacctgcacgtgcactcgccgttttcgttcctcgacggcgcctcccgg
ctggatgacctgatcgcggaggcggccctgcacgggatgccggccctggccctcaccgac
cacaacaacgtgtcgggagcggtgcgcttccagcgcaaggcacaggaggccggcatccag
ccgattcagggggcagagctcaccctggagggcggctaccacctcacgctgctggccacc
gggcccaagggctacgccaacctgaaccggctgatcaccgccgcccatctcgggcaggag
ccccgcgcgacgccgggggcgatgttcgccctggccccgggccacgaccggctgcagccg
gcgtgtcccctgtcggccctcagccacgacaccgacgggctgatcgcgctctcgggctgc
cggcggggcgagattccctccctgatcctgcgggggcggctggccgaggcggaggccgcg
gcccggcgctacgcggcctggttccccggacgcttctacctggagctgcacgacgagcgg
ctgcccggcgaacaggcattgaaccgcgccctgcgggacctgggcgaggcgctgggtctg
ccgctggtggtcacgtccaacgtgcaccaccgcacgcgcgaggagtttttcgtgcacgac
ctgctcacctgcgtgcgcaccctcacccgcatcgaccagccccacccggagcggccgctc
aacgaccagcgctacctgaagccgccggaggtcatgatcgagcgcttccgggagtttccg
gaggcggtgaagaacaccctcgccatcgccgagcggtgccgaccggtgctggacctggac
gcccggctccacccggagtttcagacccccgacggctcgcaccccgccgcctacctcacc
cacctggtctacgacggggcggcccgccgctacgggcgcatcaccgagcggatccgccgc
cggctggagcacgagctgaccatcatcacccggctggggtacgaggactacttcctgctg
gtctgggacgtggtccgcttcgcccgggagcgggggatccgctgcgccgggcggggctcg
gccgccgactcggcggtggcctactgcctcttcatcaccgacgtggacgcgatcgagcgc
ggcctgctgttcgagcgcttcatgtcgctggagcgggcgcagaagcccgacatcgacatc
gacttcgacgcccgccggcgggacgaggtggcggcctacgtctaccgcaagtacggcgcc
gaccacgtggcctcggtctgcacctacaacaccttccaggcccgctcggcggtgcgggac
ctgggcaaggcgatgggctttcaggaggcggatctggactacctggccaagcgcattccc
tggcacgccggggccgacgagatcctcaccgtcatggcccgctaccccgagctgcgccag
tcaggcattccctggcacaagttcgagcagctggtgcaggcggcggagcgggttgcccgc
ttcccccgcttcatcggcacccacctgggcgggctggtgatctcccgccggccgctcctg
gaggtgacgccgctgcagatggcggcgaagggccaggtggtctgccagttcgacaaggag
tacgtggaggacctggggctggtgaagctggacctgctctccctgcgcaccttcaccgcc
gtcgacgacgcggtgcgggccatcggcgatatcgactacgagcagatcccccacggcgac
gcggccacttatgagatgctgggcgtgggcgaatccatcggcgtcttccagctggagtcg
ccggcgcagcgggcgctgcaggcccggctgaagccggaccggttcgaggacatcgtcgcc
tcggtggccatcatccgccccgggcccatcaaggggaacatggtggagccgttcctggcc
cgccgccacgggaaggaggaggtcacctacctgcatcccaagctgaagccgatcctggag
aagacctacggcgtggtgctcttccaggagcaggtgatcgagatcgccaccgcggtggcg
ggcttcacccccggcgaggcggaccagctgcgccgggtgatgacccacgcccgcaaccgg
gaggacatggaggccatcggccggctcttccggcagaaagcggccgcggccggggtggat
ccggcggtggccgacaccatcttctcctacatccagggctacgcctcgtacggcttctgc
gaggcccacgccgcggcgtttgccaacacggcctacaagaccgcctatctggtgcgccac
tacccggccgagtacttcgccgcgctcatgtcggcacagccgatgggctactaccccatc
aacacgctggcggtggaggcccgccggcgcggcgtcggcctgctgccggtggacatcaac
cggtcggaggaagccttcaccgtggaggagtggagccgggaggcctgggaggccttctgg
gggatggagccctttgcccccgaatacccggcgacaggcaaggcgatccgcatcgggctc
cgggccgtgaagggggtgggggagccggcggccgcagcgatcctggcggcccgggacggg
ggcgagttccggtcgctggctgacctggtgcgacggaccgggggtgcggtgccgcgcggg
ccgctggaggcgctggtgctggccggcgccttcgatcggctgcactccaaccggcgggcg
gcgctctggcaggtggcgcacctgctggaggcggaaaggatccggcaggagcgtggggcg
gggcaggccggcctgctggacggcgatgcgcccgggctgggcgcgcaggcggcggaagcg
ctggaggccgcgtcgccgcaggggacacctgcgatcgccgacttcggcgccgccgagcgc
tacctgaaggagtacgagctcacgggcctgatggtgcggacccacttcatgcgcttcgtg
cgggagcggctggcccgggaggggtacctcaccgcgcaggaggtgcggcagcgccgggcg
ggggagctggtgaaggtggccgggctgcccgtctgcccgcaccggccgccgacccggtcg
ggcaagatcgtcgtcttcctgtccctggaggacgagacggggctgatcgacctcacgatc
tttgaagacgtctaccagcgctacggccatctgatcttcaccgacccgcggccgccgctg
gccgccctgggccgcgtcgaccgccggggcgggcacgtctctatcacagtcaacagatta
cggctgctggatacttga

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)

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