KEGG   Streptococcus parauberis: STP_0328
Entry
STP_0328          CDS       T01504                                 
Symbol
rnr
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
stk  Streptococcus parauberis
Pathway
stk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:stk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    STP_0328 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stk03019]
    STP_0328 (rnr)
   03016 Transfer RNA biogenesis [BR:stk03016]
    STP_0328 (rnr)
Enzymes [BR:stk01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     STP_0328 (rnr)
Messenger RNA biogenesis [BR:stk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     STP_0328 (rnr)
Transfer RNA biogenesis [BR:stk03016]
 Prokaryotic type
  tRNA degradation factors
   STP_0328 (rnr)
SSDB
Motif
Pfam: RNB S1 CSD2 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AEF24776
Position
347113..348999
AA seq 628 aa
MMISQNMLVILNPKIKKIQQPIYIKKEPVVLDGSEIIKVEIEKYPTRGHDYFVGNVRDIV
GHQGDVGIDVLEVLESMDIVSEFPDDVLAEANAIPDAPSDKDLIGRVDLRKEITITIDGA
DAKDLDDAIHIKKLENGNFELGVHIADVSYYVTEGSALNREAAERGTSVYVTDRVVPMLP
ERLSNGICSLNPNVDRLTQSAIMEIDMQGKVVDYQICQSVINTTFRMTYSRVNDMIAGDE
EALDEFAPIVEAVQDMAVLHKILETMRVKRGALNFDTSEARIIVNDKGMPVDIVVRSRGI
AERMIESFMLAANECVAEHFSKAKLPFIYRVHEEPKSEKLQKFLDYASIFGVQIKGTANK
ISQEALQDFMAKVEGQPGAEVLNMMLLRSMQQARYSETNHGHYGLAAEYYTHFTSPIRRY
PDLLVHRMIRDYSHVTEEKKEHFAQVIPELAASSSRLERRAIDAERLVEAMKKAEYMEEH
VGEEFDAIVASVVKFGMFIELPNTIEGLIHVTSLPEFYNYNERNMTLQGEKSGIVFKVGQ
PIHVKLVKANKETGDIDFEYLPSEFDVKEKVEKPDRQNNRRRNNDSKKGDRFPKNKSNDQ
NKEEAPKKKGRKPFYKDAAKKNSKKRSR
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgatgataagccaaaatatgctggttatattaaatccaaaaatcaaaaaaattcaacaa
ccaatttatatcaaaaaagagccagttgttttggacggatcagaaattattaaagttgag
attgaaaaatacccaacaagaggacatgattattttgtgggaaatgtccgtgatattgtt
ggtcatcaaggggatgttgggattgatgttttagaagttttggaatcaatggatattgtt
tcagagtttccagatgatgtcttagctgaagcaaatgctataccagatgcaccaagtgat
aaggatttaattggacgtgttgatttacgcaaagaaattaccattaccattgatggggct
gatgccaaggacttagatgatgccattcatatcaaaaagcttgaaaatgggaacttcgaa
ctaggtgtccacattgctgacgtgtcatactatgtaactgaaggttctgccttaaatcgt
gaagctgctgaacgtggaacatctgtttatgtaactgaccgcgttgttccaatgttacca
gaacgtctttctaatggcatttgttcattgaatccaaacgtggaccgtctgacacagtca
gccattatggaaatcgatatgcaaggtaaagttgttgattatcaaatctgtcaatctgtc
attaatactactttcagaatgacttatagccgtgtaaatgatatgattgctggcgatgaa
gaggcccttgatgaatttgcacctattgttgaggcagtccaagatatggcagtccttcat
aaaatccttgaaaccatgcgtgtcaaacgcggagcccttaactttgacacctctgaggcc
cgtattattgtcaatgataaaggtatgccggttgatattgtggtccgcagtcgcggaatc
gcagagcggatgattgaatctttcatgttagcagccaatgagtgtgtagccgagcatttt
tcaaaagctaagctgccatttatataccgtgtccatgaagaaccaaaatcagagaagtta
caaaaattcttggactatgcaagtatttttggtgttcaaattaaaggtacggcaaataaa
atctcacaagaagctctacaagattttatggccaaagttgaaggccagccaggggcagaa
gtactgaacatgatgttactacgttccatgcaacaagctcgctattcagaaactaatcat
ggtcactatggactggctgctgagtattacacacatttcactagtccaatcagacgttac
cctgacttgcttgttcaccggatgattcgtgattatagtcatgtgaccgaagagaagaag
gaacattttgcacaggttatcccagaattagcagcatcatcttcacgcttagaacgtcgt
gccattgacgcagaacgtttagtagaagctatgaagaaagctgaatacatggaagaacac
gttggtgaagaatttgatgccattgttgccagcgtagttaaatttggaatgttcattgaa
ttaccaaataccattgaaggtttaatccatgttaccagtcttccagaattctataattac
aatgaacgtaatatgaccttacaaggtgaaaagtcaggaatagtctttaaagtcggtcag
ccaattcatgttaaattggtcaaagcaaataaagaaactggagatattgactttgaatat
cttccaagtgaatttgatgtgaaagaaaaagtcgaaaaacctgacagacaaaataatcgt
cgcagaaataacgattctaagaagggcgaccgattcccaaaaaacaaatcaaatgatcaa
aacaaagaggaagcacctaagaaaaagggaagaaaacctttctataaagacgctgccaaa
aagaatagtaagaaaaggagtcgttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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