KEGG   Streptococcus thermophilus LMG 18311: stu0006
Entry
stu0006           CDS       T00213                                 
Symbol
trcF
Name
(GenBank) transcription repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
stl  Streptococcus thermophilus LMG 18311
Pathway
stl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:stl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    stu0006 (trcF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stl03400]
    stu0006 (trcF)
Enzymes [BR:stl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     stu0006 (trcF)
DNA repair and recombination proteins [BR:stl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      stu0006 (trcF)
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII MFD_D3 UB2H AAA_22 IstB_IS21 RecG_dom3_C
Other DBs
NCBI-ProteinID: AAV59736
UniProt: Q5M6L3
Position
5046..8552
AA seq 1168 aa
MANTILELFGKNHQLLEWRDKVSLLSRQLVMGFSGSSKAVAMASALSNQVPKIFIVTSTQ
NEAEQLVGDLSAILGEDKVYSFFADDVSAAEFIFASPEKTHSRLESLNFLMDEEASGVLV
TSLVGTKLHLPNPRVYKDSRIDLVLGKEYDLDALSRHLTHIGYQRVEQVLSPGEFSRRGD
ILDIYELTAELPYRLEFFGDEIDGIRQFDSDSQKSLNNLDHVVISPADDIILTREDYQRA
EKALESAVSRADGLHKAYLEEVLSVTSDGHRHKDLRKFLSLFYDKAYTLFDYLPKGTPVF
IDDFQKIVDRHGRLELEVANLLTEDLHQGKSLSHLNYFVDSFKTLRNYQPASFFSNFHNG
LGNLKFDKLYQFTQYPMQEFFNQFPLLIDEIRRYTKNKATVILQVGSDKQLNSLKETLEE
YNLDLPLSSFGDLIPHKAQLVLGNLSNGFYFADEKVVLVTEREIFHKKVKRRTRANHISN
AERLKDYNELEKGDYVVHQTHGIGQFKGIETIEIRGVHRDYLTIQYQDAATISLPIEQIE
SLSKYVSVDGKEPKINKLNDGRFQKTKQKVSKQVEDIADNLLKLYAERSQLKGFAFSPDD
DNQRDFEDEFSYAETVDQLRSIKEIKADMESDKPMDRLLVGDVGFGKTEVAMRAAFKAVN
DGKQVAILVPTTVLAHQHYMNFKERFENHAVEVDELSRFRSKKEQNETIKNLAKGRIDII
IGTHRLLSKDVKFSDLGLLVIDEEQRFGVKHKEKLKELKAKVDVLTLTATPIPRTLHMSM
LGIRDLSIIETAPTNRYPVQTYVMETNPGLIREAILREMDRGGQIFYIYNRVETIDQKVS
ELHELVPEARIGFVHGQMSEVMLENTLLYFLNGDYDILVATTIIETGIDIPNVNTLLIEN
ADHMGLSTLYQLRGRVGRSNRIAYAYLMYHPDKVLTEVSEKRLDAIKGFTELGSGFKIAM
RDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAINKRQGKTQVRQKGNAEFNLQIDAY
LPSDYISDERQKIEIYKRIREIENQKDYQDLQDELIDRFGEYPDQVAYLIEIGLVKAYLD
AAFAELVERKNDTIIVRFEKVSLKFFLTQDYFEAISKTNLKARISDNQGKVEIIFDVRNK
KDYEILEELKIFGQTFMEIKKRKEKKET
NT seq 3507 nt   +upstreamnt  +downstreamnt
atggctaatacaatcttagaactttttgggaagaatcatcaattgcttgagtggcgtgat
aaggtaagcttattgagtaggcaattggtcatgggattttctggttcgagcaaggcagtt
gccatggcatctgccctttctaatcaggttcctaagatttttatagttacctcaacacaa
aatgaagctgagcaattagtaggagatttatcagctatcttaggagaggataaggtttat
tctttttttgcggatgatgtatcagctgctgaatttatctttgcttcaccagaaaaaact
cattctcgtcttgaaagtcttaactttttaatggatgaagaggcaagtggggtcttggtt
acaagtttagttggtacgaagttacatttgcctaatcctagggtttataaggactctcga
atcgacttagtactagggaaggaatatgatttagatgctctcagtaggcatctaacgcat
attgggtatcaaagagtagagcaagttctttcacctggtgagtttagtcgtaggggggat
attttagatatttacgaattgactgcagagcttccctaccgattagagttttttggagat
gagattgatggcattcgtcagtttgatagcgatagtcagaaatctttaaacaatttagat
catgttgtcatatcaccggcggatgatattatcttaacaagagaagattaccaacgtgct
gagaaggccctagaaagtgcggtatcgagggcagacggtcttcataaggcttaccttgag
gaagttctatcagtgacgagtgatggtcatcgccataaagatttacgtaagtttttgtct
ctcttttatgacaaagcttataccttatttgactatcttccaaaagggactcctgtattc
attgatgattttcaaaagatagtggaccgccatggacgtcttgaattggaagtggctaat
cttttaactgaggatcttcatcaaggtaagtctctgagtcatctaaactacttcgtggat
tcatttaagactttacgtaactatcagccagctagcttcttttctaatttccataatgga
ttaggaaatcttaaatttgataagttgtatcaattcacacaataccctatgcaggagttt
ttcaaccaatttccattactgattgacgaaattcgtcgttatactaagaataaggcaacg
gttattttacaagtagggtctgataagcaacttaattctttgaaggaaaccttggaagag
tacaatctagatttacctcttagtagctttggagatttgatacctcataaggctcaacta
gtcctaggaaacttatcgaatggcttttactttgcagatgaaaaggttgttctggttact
gaacgtgagatttttcataaaaaagtaaaacgtcgtacgcgtgctaaccatatttctaat
gctgagcgtcttaaagactataatgaacttgaaaaaggtgattatgttgtacaccagact
catggtataggacaatttaaaggtattgagactattgaaattagaggggtacaccgtgac
tacttgaccattcaatatcaggatgctgcaacaatttctctacctattgagcagattgag
agtctctctaagtatgtgtcagtggacgggaaagagcctaaaattaataaactcaatgat
ggtcgtttccaaaagaccaaacaaaaagtaagcaagcaggtagaggatattgctgataat
ctcttaaaactctatgccgagcgaagtcaactgaaaggatttgctttttcaccggatgat
gataatcaaagggattttgaagatgagttctcctatgctgagacagtggatcaactgcgt
tccattaaggaaattaaggcggacatggagtcagacaaacctatggatcgtctcttggtt
ggtgatgttggttttggtaagacagaggtagccatgcgtgctgccttcaaggcggttaat
gatgggaagcaagttgctatcctagttcctaccacagttcttgcccatcagcattatatg
aattttaaagagcgttttgaaaatcatgctgttgaagtagatgaactcagtcgttttaga
agtaaaaaagagcaaaatgagactattaaaaatctagctaaaggacgtattgatattatt
attggtacccaccgattgttgtctaaagatgttaagttttctgatttaggcttgctagta
attgatgaagaacaacgttttggcgtgaagcataaagagaaacttaaggagttgaaagct
aaagttgatgtccttactctaactgcgacccctattcctcgtacacttcatatgtctatg
ttgggtattcgtgatttgtcgattattgagacagcacctaccaaccgttatccagttcaa
acttatgttatggaaaccaatcctggtcttattcgagaagcgatattaagggagatggac
agaggtggccagattttttatatttataatcgtgttgaaaccattgatcaaaaagtttct
gaactgcatgagctagtccctgaagcacgtatcggatttgttcatggtcagatgagtgaa
gttatgttggagaatactctattatattttttgaatggtgattacgatattttggtagca
acgaccattatcgagacaggcattgatatccccaatgttaatacacttctcattgagaat
gcagaccatatgggcttgtctaccctttatcagctaagaggtcgtgtgggacgtagtaat
cgaattgcctatgcctaccttatgtatcatcctgacaaagtgttgacggaagtctcagag
aagcgtttggatgctattaagggatttacagaactgggatcaggtttcaaaattgctatg
cgtgatttatctattcgcggtgcagggaatattcttggtgcttctcaaagtggtttcatc
gactcagtcggatttgaaatgtactcgcaactcttggaagaggctatcaataagcgtcaa
ggtaagactcaggttcgtcaaaaaggaaatgcagagttcaatcttcagattgatgcttac
cttccttctgactatatttctgacgagcgccaaaaaattgaaatttataagcgtattcgt
gaaattgagaatcagaaagactaccaggaccttcaagatgagttgattgaccgctttgga
gaatatccagatcaagttgcctatctcattgagattggtctggttaaggcctatttagat
gctgcctttgcagaattagtcgagcgtaagaacgatactatcatcgttcgtttcgaaaaa
gtctctctaaaattcttcttgacacaagactattttgaagccatctctaagacgaattta
aaggcaagaattagtgataaccaaggaaaagtagagattatttttgatgttcgtaacaag
aaagactatgaaatccttgaggaattaaagatttttggtcagacatttatggaaattaaa
aaacgtaaagaaaaaaaagaaacttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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