KEGG   Streptococcus thermophilus LMG 18311: stu1554
Entry
stu1554           CDS       T00213                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
stl  Streptococcus thermophilus LMG 18311
Pathway
stl03030  DNA replication
stl03410  Base excision repair
stl03420  Nucleotide excision repair
stl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:stl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    stu1554 (ligA)
   03410 Base excision repair
    stu1554 (ligA)
   03420 Nucleotide excision repair
    stu1554 (ligA)
   03430 Mismatch repair
    stu1554 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:stl03032]
    stu1554 (ligA)
   03400 DNA repair and recombination proteins [BR:stl03400]
    stu1554 (ligA)
Enzymes [BR:stl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     stu1554 (ligA)
DNA replication proteins [BR:stl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     stu1554 (ligA)
DNA repair and recombination proteins [BR:stl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     stu1554 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     stu1554 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     stu1554 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      stu1554 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT E1-E2_ATPase BRCT_2
Other DBs
NCBI-ProteinID: AAV61157
UniProt: Q5M382
Position
complement(1370777..1372735)
AA seq 652 aa
MEKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG
GLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVKSEFPNADYMAELKIDGLSISLTYV
DGILQVGATRGDGSVGENITENVKRISDIPLKLDQPLNITVRGECYLPRAEFERINTQRQ
ENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEASPTERLTQNDVLNEVAELGFS
VNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAIQEELGFTVKAPRWAIA
YKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYITEKDIRIG
DTVIVYKAGDIIPAVLRVVESKRTTQEAMPVPSQCPSCGSGLLHFEDEVALRCINPSCPA
QIKEGLIHFASRDAMNISGMGPSVVEKLFKAELVKEVADIYGLNSQDFLQLEGFKEKSAE
KLYAAIQASKENSAEKLLYGLGIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGE
VIAKSIQRYFAKEEAQVLLKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSE
AKAKLEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggaaaaacgaatgaaagagctggttgacaaacttaaccagtatgcaaaagagtattat
accgaggataatccatcggtgtcagatgccgagtatgataagctctatcgtgagttagta
actttagaggctgaacacccagaacttgttcaggcggatagccctacgcaccgtgtgggt
ggcctggttcttgatggttttgagaaataccaacatgagtatccgctttatagtttgcag
gatgctttttcacgagaagagctagatgcctttgataagagggtcaagtccgaatttcct
aacgctgactatatggccgagctcaaaattgatggcctttcaatttctctaacctatgtg
gatggtattcttcaagtaggtgcaacgcgaggtgatggttctgttggtgaaaatatcact
gaaaatgttaagcgaatctcagatattcctctgaagttggatcaaccgcttaatatcacc
gttcggggtgagtgttatttgccacgagctgagtttgaacgcatcaatacccagcgccag
gagaatggtgaggccgaatttgccaatccacgtaatgctgcagcaggaactcttcgtcaa
ttagatacgaaagtagttgctgagcgtcgtttggccaccttcttttatcaagaagctagt
cccactgagcgcctgacacaaaatgatgtcttgaatgaagtggcagaacttggcttctcc
gttaatccacgccgtattgtgacatcatcgatggatgagatttgggactttattcaagct
gttgggcaagatcgtgatcacttggcttatgatattgatggagttgttatcaaggtcaat
agtttggccatacaggaagagcttggctttacagttaaggcaccacgttgggccattgcc
tataaattcccagctgaggaaaaggaagcaaaacttctctcagttgattggcaggtgggt
cgtacaggtgtagtaacgccgacggctaatttgaccccagtacaattggccgggacaaca
gttagccgagctaccctacacaatgtagattatattacggagaaagacattcgtattggt
gataccgttattgtttataaggctggtgatattatccctgctgttcttcgtgtggtagaa
agtaagcgtacaacacaagaagcgatgccagttccgagtcaatgtccatcttgtggtagt
ggtctcttacattttgaagatgaagtggccctacgttgtatcaatccatcttgtcctgct
cagattaaggaaggtcttattcattttgcttctcgtgatgccatgaacatctcaggtatg
ggaccttcagtggttgaaaaactctttaaagctgaattggttaaagaggtggctgatatc
tatggtttaaatagtcaggatttcctccaattagaaggtttcaaggaaaaatcagctgaa
aaactatatgcagctattcaagcatcaaaagaaaattctgcagagaaactgctctatggt
ttgggaattcgccatgttggtgccaaagttagtaagcaattgctagaatcttttggaact
atcaaggagttggcaagtgcagatgtccaagctattgctgctgtagatggtttgggagag
gttatcgccaagtcaatccagcgttattttgccaaggaggaggctcaagttcttctgaaa
gaactggaatcctatggcgttaatttatcctatcttggtcaaaaagtagcagatgatgcc
attctatctggtaagactgttgttttgacagggaaattggagcatcttaaacgtagtgaa
gcgaaggcaaaactagaggccctgggtgctaaggtgacgggttcagtctctaagaaaaca
gatttagtggttgctggtagtgatgccggaagtaagttggaaaaagcacaaagcctagga
attgaagtaaaagatgaggcttggttgctggatttatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (30)   

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