KEGG   Salmonella enterica subsp. enterica serovar Typhimurium LT2: STM1237
Entry
STM1237           CDS       T00065                                 
Symbol
ymfC
Name
(RefSeq) 23S rRNA pseudouridine synthase E
  KO
K06181  23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
Organism
stm  Salmonella enterica subsp. enterica serovar Typhimurium LT2
Brite
KEGG Orthology (KO) [BR:stm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:stm03009]
    STM1237 (ymfC)
Enzymes [BR:stm01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.20  23S rRNA pseudouridine2457 synthase
     STM1237 (ymfC)
Ribosome biogenesis [BR:stm03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    STM1237 (ymfC)
SSDB
Motif
Pfam: PseudoU_synth_2
Other DBs
NCBI-GeneID: 1252755
NCBI-ProteinID: NP_460207
UniProt: Q8ZPZ1
Position
complement(1323538..1324203)
AA seq 221 aa
MRQLISSENTMQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLFNKPYDVLPQFTDEAGR
RTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPGKRTGKIYYVQVEGIPDNA
ALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTSWLKVTLYEGRNRQV
RRMTAHVGHPTLRLIRYSMGDYTLNGLDNGQWREIAQEKDR
NT seq 666 nt   +upstreamnt  +downstreamnt
atgcggcaattaataagttctgaaaacaccatgcaaaaaacttcttttagaaatcactac
gttaagcgattcagctcacgacaagcatctaaatcacggaaagaaaaccagccaaaacgc
gtggttttgttcaataaaccttacgatgtgttgccgcagttcacggatgaagcaggtcgc
cgcacgttaaaagattttattcctgtgcaaggcgtttatgccgcaggccgcctggaccgc
gacagcgaagggcttttggtgctgactaatgacggcgcgctgcaggcgcgcctcacgcaa
ccgggcaaacgcaccggcaagatttactatgttcaggtagaaggtataccggataatgca
gcgctgcaggcgcttcgtactggcgtcacgctcaacgatggccctaccctgcccgccggt
attgagattgtcgcggagcctgactggctgtggccgcgcaccccgccgattcgcgaacgg
aagaatattcccaccagttggctaaaagtcaccttatatgaaggccgcaaccgccaggta
agacgcatgacagcgcatgtcggtcatcccactctacgattaattcgttacagcatgggc
gactacacgctcaacggcctcgataatggacagtggcgcgagatcgcacaggagaaagac
agatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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