KEGG   Sulfurisphaera tokodaii: STK_04440
Entry
STK_04440         CDS       T00062                                 
Symbol
rrp4
Name
(GenBank) exosome RNA-binding subunit Rrp4
  KO
K03679  exosome complex component RRP4
Organism
sto  Sulfurisphaera tokodaii
Pathway
sto03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sto00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    STK_04440 (rrp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sto03019]
    STK_04440 (rrp4)
Messenger RNA biogenesis [BR:sto03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     STK_04440 (rrp4)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     STK_04440 (rrp4)
SSDB
Motif
Pfam: KH_6 RRP4_S1 KH_1 RRP40_S1 S1
Other DBs
NCBI-ProteinID: BAB65434
UniProt: Q975G7
Position
complement(450804..451547)
AA seq 247 aa
MSNSKIYFEDRSIVTPGDLIAEGDFQIPWSPYYYKIGNKYYSSITGLIEVKENLFEIVPL
EGHRYIPKVGDTVIGLIEDVEIYGWVLDIKSPYSAYLPASSFLGRPVSPGEDLRRYLNLG
DYVIAKIETYDRTINPILSIKGKGLGRVSSGIVIDIPPVKVPRVIGKNRSMLDTLTSETG
CEILVAQNGRILANCATKMIEEALVEAIQIIEKESHIKGLTEKIRKFLREKLGETKNDSA
TKTEANT
NT seq 744 nt   +upstreamnt  +downstreamnt
atgtctaatagtaagatatattttgaagatagaagcatagtcaccccaggagatttaatt
gccgaaggagactttcaaataccatggtcaccatattattataagataggaaataaatat
tattcgtccataacaggtttaatagaagtcaaggaaaatttatttgagatagttccatta
gaaggacatagatatatcccgaaagttggtgatacagttattggattaatagaagatgtt
gaaatttatggatgggttctggatataaaatcaccttattctgcatacttaccagcttct
tcattcttaggtaggccagttagcccaggagaggacttgcgtagataccttaatttggga
gattacgtaattgctaaaatagaaacctatgatagaacgataaatcctattttatctata
aaagggaaaggtttaggaagagtatctagcggaatagtaattgatatacctccagtaaaa
gtcccgagagtaatcgggaaaaacagaagcatgcttgacacattaactagcgaaacaggc
tgtgaaattcttgttgctcaaaatggaagaatactagctaattgtgctactaagatgatt
gaagaagctttagttgaagctattcagattatagaaaaagaatctcatataaaaggacta
acggaaaaaataagaaagtttttgagagaaaaattaggtgagacaaaaaatgattcagct
acaaaaaccgaggctaatacttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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