KEGG T00504: Strop

Salinispora tropica: Strop_1543

Entry

Strop_1543 CDS T00504

Definition

DNA primase, small subunit

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

stp Salinispora tropica

Pathway

stp03410	Base excision repair
stp03420	Nucleotide excision repair
stp03430	Mismatch repair
stp03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:stp03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:stp03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:stp03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:stp03450]

SSDB

Motif

Pfam:

DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1752252..1753277

AA seq 341 aa
MGGTKAAAEEIKVAGQHVRLSSPDRVIFPQRGFTKADVFHYYLAVGPGIMRALGERPTTL
QRFPEGIEGEAFFQKRVPARGVPPWVRTAQISFPSGRKAAELCPADLAHVAWAAQMGTVV
FHPWPVRATDPDHPDELRLDLDPQPGTDFADAAKAATELRAILAELGVPGWPKTSGGRGV
HVYLRIQPRWTFVEVRRATIALARELERRRPDLVTTAWWKEERGARVFVDFNQMARDRTI
ACAYSLRANARATVSTPLAWDELADAEPDDFDLRSVPARLAEGGDPHAGIDDAAWDITPL
LEWVERDAANGQGDLPYPPEHPKMPGEPKRVQPSKDRDRPR

NT seq 1026 nt +upstreamnt +downstreamnt
atgggtggcacgaaggccgcggccgaggagatcaaggtcgccgggcagcacgtccggctg
agtagcccggaccgggtgatttttccacaacgcgggttcaccaaggccgacgtcttccac
tactacctcgccgtcggcccgggcatcatgcgtgcactcggcgagcggccgaccaccctg
caacgcttccccgaggggatcgagggggaggccttcttccagaaacgggtgcccgcccgg
ggtgtgccgccctgggtccgtaccgcgcagatcagcttccccagtggccggaaagcggcc
gagctctgcccggctgatctggcccacgtggcctgggcagcccagatgggcaccgtggtc
ttccatccgtggccggtccgtgccacggatccggaccaccccgacgagctgcggctcgac
ctcgacccgcagcccggtaccgacttcgccgacgcggcgaaagcggcgaccgagctccgc
gcgatcctggctgagctgggcgtccccggttggccgaagacctccggcggccggggggtg
cacgtctatctgcggatccagccgcgctggaccttcgtcgaggtccgtcgggcgaccatt
gccctggcccgggagttggagcggcgccgacccgacctggtcaccaccgcgtggtggaag
gaggaacgcggcgcccgggtattcgtcgacttcaaccagatggcccgggaccggacgatc
gcgtgtgcgtactcgctgcgggccaacgcccgcgccaccgtctccaccccactggcctgg
gacgaactggccgacgctgaaccggacgacttcgacctgcggagcgtgccggcacggctg
gccgagggcggtgacccacacgccggcatcgacgacgccgcgtgggacatcacgcccctg
ctggagtgggtcgagcgggacgccgccaacgggcagggtgacctgccatacccgccggaa
caccccaagatgcccggtgagccgaagcgggtgcagccgtcgaaggatcgagaccgcccc
cgctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-STP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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