KEGG   Salinispora tropica: Strop_3105
Entry
Strop_3105        CDS       T00504                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
stp  Salinispora tropica
Pathway
stp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:stp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Strop_3105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stp03019]
    Strop_3105
   03400 DNA repair and recombination proteins [BR:stp03400]
    Strop_3105
Enzymes [BR:stp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Strop_3105
Messenger RNA biogenesis [BR:stp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Strop_3105
DNA repair and recombination proteins [BR:stp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Strop_3105
SSDB
Motif
Pfam: RQC DEAD HRDC RecQ_Zn_bind Helicase_C ResIII Helicase_Sgs1
Other DBs
NCBI-ProteinID: ABP55541
UniProt: A4X9G7
Position
3557214..3559055
AA seq 613 aa
MSSPTDQQPAALETLRRVFGYDAFRGFQQEVIEHVTAGGDALVLMPTGGGKSLCYQIPAL
LRDGVAVVVSPLIALMQDQVDALTAVGVRAGFLNSTLDVDARRAVERAFVARELDLLYLA
PEALGTRGVQHLLDQGRISLFAIDEAHCVSQWGHDFRPDYLALSMLHERWPGVPRIALTA
TATSATRAEISTRLQLTSARHFVASFDRPNIQYRIAAKREPKRQLLALLRDEHPGDAGII
YCLSRATVEKTAEFLVDNGVTALPYHAGLDAVTRARHQQRFLREDGVVMVATIAFGMGID
KPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPATAWLAYGLTDVVQQRRLIDTSEGDPAH
RRNLATHLEAMLALCETVRCRRAQLLDYFGETAPACGNCDTCLQPPESWDGTIAAQKLLS
TIYRLDRERSQRFGAGHCVDILLGRATDKIQQHRHDSLTVFGIGTDLSEAEWRGVVRQLL
AEGLLAVEGDYGTLALTDTSAEVLGRRRTVMLRREPARKARPAKPRGAATVVAELTPAAA
EAFERLRAWRAATAKEQGVPAYVIFHDATLRQIATDAPADLADLAKVGGVGEAKLAKYGE
QVLTVLADDPHPA
NT seq 1842 nt   +upstreamnt  +downstreamnt
atgtcctcccccaccgaccagcagcccgccgcgttggaaacgctgcggcgtgtcttcggc
tacgacgccttccggggcttccagcaggaggtcatcgagcacgtgacggccggcggggac
gccctggtactgatgccgaccggcggtggcaagtcgctctgctaccagatcccggcgctg
ctgcgcgacggcgtcgcggtggtcgtgtcaccgttgatcgcgctgatgcaggaccaggtt
gacgcgctgaccgcggtcggggtccgagccggcttcctcaactcgacgcttgacgtcgac
gcccgccgcgccgtcgagcgggccttcgtcgccagggagctggatctgctctacctcgct
ccggaggccctgggcacccggggcgtgcagcacctgctcgaccaggggcggatcagcctc
ttcgcgatcgacgaggcgcactgcgtgtcgcagtgggggcacgacttccgcccggactac
ctggccctgtcgatgctgcacgaacgctggccgggggtgcctcggatcgcgttgacggcc
accgcgaccagcgccacccgggccgagatctcgacccggctccagctcacctcggcccgg
cacttcgtcgccagcttcgaccggcccaacatccagtaccgcatcgcggcgaagcgggag
ccgaagcggcaactactggccctgctccgtgacgaacacccgggggacgccggcatcatc
tactgcctgtcccgggccaccgtggagaagaccgcggagtttctggtcgacaacggtgta
accgcgctgccctaccacgccggcctggacgcggtcacccgcgcccggcaccagcagcgc
ttcctgcgggaggacggcgtggtcatggtcgcgacgatcgcgttcgggatgggcatcgac
aagcccgacgtgcggttcgtcgcccaccttgacctaccgaagtcggtggagggctactac
caggagaccggtcgcgccgggcgggacggcctaccggcgacagcctggctcgcctacggc
ctgacggatgtggtgcagcagcgccggctgatcgacacctcggagggggacccggcgcac
cggcgaaatctcgccacccatctggaggcgatgctcgcgctctgtgagacggtccgctgc
cgccgggcgcagctcctggactacttcggcgagaccgcccccgcctgcggcaactgcgac
acctgcctacagccacccgagtcgtgggacggcacgatcgccgcgcagaagctactctcc
acgatctaccggctcgaccgggagcgcagccaacgcttcggtgccgggcactgcgtcgac
atccttctcggccgcgccaccgacaagatccagcagcaccggcacgactccctgacggtc
ttcgggatcggcaccgacctgagcgaggcggagtggcggggggtggtccggcagctgctc
gccgaggggctactggcggtcgagggcgactacggcacccttgccctcaccgacaccagc
gcggaggtgttgggccgacgtcgcaccgtcatgctgcgccgcgagccggcccggaaggcc
cgaccggcgaagccacgcggcgcggccaccgtggtcgccgagctgacgccggccgccgcc
gaggccttcgaacggctacgcgcctggcgggccgccaccgccaaggagcagggggtgccg
gcgtacgtgatcttccacgacgccacgctgcgacagatcgccaccgacgcccccgccgac
ctggccgacctggccaaggtcggcggcgtcggtgaggcgaagctggcgaagtacggcgag
caggtgctgaccgtactcgccgacgacccccaccctgcttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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